Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03373 ATGCCGATCAGAAACATCGCCATCGGAAGGCCCGAAGAGGCCACTCACCCAGACACCTTGAAGGCTGCGTTGTCTGAGTTTATCTCCACACTCATCTTCGTCTTCGCCGGTTCCGGTTCCAGCATCGCTTACAACAAACTCACCAACGACGGACCCGCTTCCCCCGCCGGTCTCATCTCCGCCGCCATAGCCCATGCATTTGCCCTCTTCGTCGCCGTCTCCGTCGGAGCCAACATCTCCGGTGGTCACGTCAACCCTGCTGTTACCTTCGGCGCCTTCGTCGGCGGCAACATCAGCTTACTCCGCGGCGTCGTTTACATCATCGCACAGCTTCTCGGGTCTATCGTCGCCTCCTTGCTCCTCCTCTTCGTTACTGGACTCTCTGTTCCCGCATTTGGACTTTCCGCTGGAGTTGGAGTTGGACCCGCTTTGGTGTTTGAGATCGTTATGACCTTCGGTTTGGTGTACACTGTGTACGCCACAGCCGTTGATCCCAAGAAGGGTAATCTGGGAATTATTGCCCCCCTCGCGATCGGTTTCATTGTTGGCGCTAACATTTTGGCGGGTGGGGCTTTCGATGGAGCATCCATGAACCCGGCTGTATCATTCGGACCTGCTATTGTGAGCTGGACCTGGACCAACCACTGGATCTACTGGGTTGGGCCTCTCATCGGTGGTGGGCTTGCTGGGCTTATCTATGAGGTTATCTTCATCAGCCACACCCACGAGCAACTCCCTACCGCTGCTGACTACTAG 756 0.5622 MPIRNIAIGRPEEATHPDTLKAALSEFISTLIFVFAGSGSSIAYNKLTNDGPASPAGLISAAIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLRGVVYIIAQLLGSIVASLLLLFVTGLSVPAFGLSAGVGVGPALVFEIVMTFGLVYTVYATAVDPKKGNLGIIAPLAIGFIVGANILAGGAFDGASMNPAVSFGPAIVSWTWTNHWIYWVGPLIGGGLAGLIYEVIFISHTHEQLPTAADY* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03373 251 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops8g03373 251 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops8g03373 251 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops8g03373 251 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops8g03373 251 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops8g03373 251 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops8g03373 251 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
Rops8g03373 251 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops8g03373 251 FunFam Probable aquaporin TIP1-1 4 250 - -
Rops8g03373 251 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Rops8g03373 251 NCBIfam MIP family channel protein 25 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops8g03373 251 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops8g03373 251 PANTHER AQUAPORIN-8 6 245 IPR034294 -
Rops8g03373 251 SUPERFAMILY Aquaporin-like 12 245 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03373 Rops-Chr8 72611826 72612985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03373 1 251 Major Intrinsic Protein MIP AT2G36830 80.159 5.92e-143 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03373 K09873 - gmx:547967 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03373 8 72611826 72612985 Rops8g03373 8 72611826 72612985 ECH
Rops8g03373 8 72611826 72612985 Rops6g00979 6 23658424 23659313 PCT