Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03370 ATGCTCCAAATAACTTGCATTTTGCTAATCTTTGTTCTGAGTTCGTTTTCACCACTTGGAACAGCAATGCTGAACCTAACACTTCCAGGAACACACCCTGACCCTGAAGCTGTTGCCCACGAAGTTCATAGAAAGGTTAATGCTTCAATTGCAAGAAGGGAAATGCTAGCAATGTTGGAGAAAGATGAGTCATCTTCATGTTTGACAGGGAACCCCATTGATGATTGTTGGAAATGTGACCCAGATTGGCCTAACAATCGTCAAAGGTTAGCTGATTGTGCCATCGGGTTTGGTCAGTATGCAAAAGGGGGTAAAGGTGGTGAATTTTACGTTGTAACTGATTCCTCAGACAATGATGCTGTTAACCCAAAACCTGGAACGTTGAGATATGCAGTGATACAGAATGAGCCATTGTGGATCGTGTTCCCAAGTAACATGATGATAAAGCTGTCTCAGGAACTGATATTTAACAGCTACAAGACCCTTGATGGGCGTGGTGCTGATGTTCACATCGTGGGAGGAGGGTGCATCACTTTGCAATATATAAGCAATATCATCATTCACAACATTCACATCCACCATTGTCATCCCTCAGGTAACACAAACGTTAGGTCAAGCCCAGAGCACTACGGTTACAGAACAGAATCAGACGGAGACGGCATATCCATATTCGGATCCAAGGACATATGGATCGACCACTGCACCCTCTCTCGTTGCAAGGACGGACTCATAGACGCCATTATGGGGTCCACAGGCATAACCATATCCAACAATTACATGTCACACCACAACGAGGTGATGCTCCTGGGACACAGCGACGACTACCTCCCAGACTCTGGCATGCAAGCCACCATCGCTTTCAACCACTTCGGTGAGAAACTCGTTCAGAGGATCCCACGTTGCAGAAGAGGTTACATTCACGTGGTTAACAATGATTTCACTGAGTGGGAGATGTATGCCATTGGAGGGAGTGGTGAACCCACCATTAATAGCCAGGGGAACCGTTACACTGCACCCACTAACCCCTTTGCTAAGGAGGTTACTAAGAGGGTTGACACTGAGCAACATAAGTGGAAGGGATGGAATTGGAGGTCTGAGGGTGATGTTATGGTTAATGGTGCTTTCTTTGTGGCTTCAGGGGAAGCTGTTGAGGTTACGTATGAGAAGGCTTACAGTATTGAACCTAAGTCCGCTGATCGTATTGTTCTTCTTACAATGTCTGCTGGTGTTCTTGGTGTTGCCAGGGACAACAACCTCGGAATGTGGAGCAGAGGACCCAATACTGACGGTGTGGAGTCTGGCCCTGAATACACGGACGACATGTCGAGGTGTTCCAGAGTGGTGCCACCATTAACGTTTGTAGTGTTGTTGGGCTTCTTGTCTTGTACAATAATACCACTTCAAACATTTATTCTATGA 1419 0.4616 MLQITCILLIFVLSSFSPLGTAMLNLTLPGTHPDPEAVAHEVHRKVNASIARREMLAMLEKDESSSCLTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQYAKGGKGGEFYVVTDSSDNDAVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTLDGRGADVHIVGGGCITLQYISNIIIHNIHIHHCHPSGNTNVRSSPEHYGYRTESDGDGISIFGSKDIWIDHCTLSRCKDGLIDAIMGSTGITISNNYMSHHNEVMLLGHSDDYLPDSGMQATIAFNHFGEKLVQRIPRCRRGYIHVVNNDFTEWEMYAIGGSGEPTINSQGNRYTAPTNPFAKEVTKRVDTEQHKWKGWNWRSEGDVMVNGAFFVASGEAVEVTYEKAYSIEPKSADRIVLLTMSAGVLGVARDNNLGMWSRGPNTDGVESGPEYTDDMSRCSRVVPPLTFVVLLGFLSCTIIPLQTFIL* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03370 472 SMART amb_all 145 342 IPR002022 -
Rops8g03370 472 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Rops8g03370 472 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Rops8g03370 472 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Rops8g03370 472 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Rops8g03370 472 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Rops8g03370 472 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Rops8g03370 472 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Rops8g03370 472 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Rops8g03370 472 SUPERFAMILY Pectin lyase-like 66 401 IPR011050 -
Rops8g03370 472 PANTHER PECTATE LYASE 18-RELATED 29 414 IPR045032 GO:0030570
Rops8g03370 472 Gene3D - 70 412 IPR012334 -
Rops8g03370 472 Pfam Pectate lyase 155 330 IPR002022 -
Rops8g03370 472 FunFam Pectate lyase 70 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03370 Rops-Chr8 72556216 72559140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03370 1 461 Polysaccharide Lyase AT3G53190 75.322 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03370 K01728 - gmx:100775595 829.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03370 8 72556216 72559140 Rops8g03370 8 72556216 72559140 ECH
Rops8g03370 8 72556216 72559140 Rops6g00982 6 23702755 23706607 PCT