Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops8g03352 | ATGGGTAGAGCTCCTTGTTGTGACAAGGCAAATGTAAAGAAAGGACCATGGTCTCCTGAAGAAGATGCAAAGTTAAAGGAATACATAGAGAAACATGGAACTGGAGGGAACTGGATTGCTCTCCCAAAAAAAGTTGGTTTGAAAAGGTGTGGCAAGAGCTGCAGACTAAGATGGCTTAATTATCTCAGACCCAATATTAAGCATGGCCAGTTTTCTGATGCAGAAGATAAAATAATTTGCAGCCTCTTTGCTAGTATTGGAAGCAGGTGGTCAATAATAGCATCTCAGTTGCCAGGAAGGACTGATAATGATATAAAGAACTACTGGAACACCAAGCTTAAGAGAAAACTGATGGCTATGATGAATAATTCAGCAGAGAGAAAACCTCAGCAAGTTGCCCTTTTATCCATCTTTAAAAATTCAACATCTTCTTCACCATTATCATTCATGGACAGCAACAACTCTTACTACCACCCTTATGGGTCTTTCACAGGCTCTGGGTCCTTTTCTTGCTCATCAACATCAAGTCTTTTGAGTGGAAATTCTTCTACTTCTGCTTCTGCTAATTCCTTTTTTCAACCACAAGAAAGTTTCATGGGTCCTACTCAATTTAAAGATATCAATAGCACCTTTGTGTTTGGTGGTGAAGCTGCTAGTTGCAGCTCTTCTGATGGTAGCTGCAACAACCAGATTAGTCATGTCATAGAACCAGAGTTTGGATACAGTGGACAAGGGCATGGTGATGCAACTTTTGTTGAGCAGATAGGTGCCGTTAATTACCTCTACAGTGGGGTGGAAGATACCCAGAACCAGAGGTTGATGTTCTCAAATGCTGGTAGTGTTAGTAGGTGGGCAGGGAAACAAAATGGATTGTGGGAAGAAAATCCATTGGACTATGGTTTAGAAGAAGTTAAACAGCTAATAAGCACTAATAGTTGCAACAACTTTTTATTTGATGACAAGAAGACAGAGGAAAGGGTCATGTACTATGCTGACTGTGGCTAA | 1005 | 0.405 | MGRAPCCDKANVKKGPWSPEEDAKLKEYIEKHGTGGNWIALPKKVGLKRCGKSCRLRWLNYLRPNIKHGQFSDAEDKIICSLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKRKLMAMMNNSAERKPQQVALLSIFKNSTSSSPLSFMDSNNSYYHPYGSFTGSGSFSCSSTSSLLSGNSSTSASANSFFQPQESFMGPTQFKDINSTFVFGGEAASCSSSDGSCNNQISHVIEPEFGYSGQGHGDATFVEQIGAVNYLYSGVEDTQNQRLMFSNAGSVSRWAGKQNGLWEENPLDYGLEEVKQLISTNSCNNFLFDDKKTEERVMYYADCG* | 335 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops8g03352 | 334 | ProSiteProfiles | Myb-like domain profile. | 9 | 62 | IPR001005 | - | |
Rops8g03352 | 334 | Gene3D | - | 7 | 68 | - | - | |
Rops8g03352 | 334 | ProSiteProfiles | Myb-like domain profile. | 63 | 113 | IPR001005 | - | |
Rops8g03352 | 334 | CDD | SANT | 16 | 62 | IPR001005 | - | |
Rops8g03352 | 334 | SUPERFAMILY | Homeodomain-like | 11 | 109 | IPR009057 | - | |
Rops8g03352 | 334 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 9 | 66 | IPR017930 | - | |
Rops8g03352 | 334 | PANTHER | OS09G0431300 PROTEIN | 1 | 307 | - | - | |
Rops8g03352 | 334 | Pfam | Myb-like DNA-binding domain | 69 | 111 | IPR001005 | - | |
Rops8g03352 | 334 | Pfam | Myb-like DNA-binding domain | 14 | 62 | IPR001005 | - | |
Rops8g03352 | 334 | Gene3D | - | 69 | 134 | - | - | |
Rops8g03352 | 334 | FunFam | Transcription factor RAX3 | 7 | 68 | - | - | |
Rops8g03352 | 334 | SMART | sant | 13 | 64 | IPR001005 | - | |
Rops8g03352 | 334 | SMART | sant | 67 | 115 | IPR001005 | - | |
Rops8g03352 | 334 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 67 | 117 | IPR017930 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops8g03352 | Rops-Chr8 | 72295758 | 72297638 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops8g03352 | 1 | 119 | MYB Transcription Factor Family | AT5G57620 | 85.714 | 7.74e-76 | 234 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MYB | Rops8g03352 | Myb_DNA-binding | 1.9e-15 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops8g03352 | K09422 | - | gmx:778084 | 462.996 |