Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03352 ATGGGTAGAGCTCCTTGTTGTGACAAGGCAAATGTAAAGAAAGGACCATGGTCTCCTGAAGAAGATGCAAAGTTAAAGGAATACATAGAGAAACATGGAACTGGAGGGAACTGGATTGCTCTCCCAAAAAAAGTTGGTTTGAAAAGGTGTGGCAAGAGCTGCAGACTAAGATGGCTTAATTATCTCAGACCCAATATTAAGCATGGCCAGTTTTCTGATGCAGAAGATAAAATAATTTGCAGCCTCTTTGCTAGTATTGGAAGCAGGTGGTCAATAATAGCATCTCAGTTGCCAGGAAGGACTGATAATGATATAAAGAACTACTGGAACACCAAGCTTAAGAGAAAACTGATGGCTATGATGAATAATTCAGCAGAGAGAAAACCTCAGCAAGTTGCCCTTTTATCCATCTTTAAAAATTCAACATCTTCTTCACCATTATCATTCATGGACAGCAACAACTCTTACTACCACCCTTATGGGTCTTTCACAGGCTCTGGGTCCTTTTCTTGCTCATCAACATCAAGTCTTTTGAGTGGAAATTCTTCTACTTCTGCTTCTGCTAATTCCTTTTTTCAACCACAAGAAAGTTTCATGGGTCCTACTCAATTTAAAGATATCAATAGCACCTTTGTGTTTGGTGGTGAAGCTGCTAGTTGCAGCTCTTCTGATGGTAGCTGCAACAACCAGATTAGTCATGTCATAGAACCAGAGTTTGGATACAGTGGACAAGGGCATGGTGATGCAACTTTTGTTGAGCAGATAGGTGCCGTTAATTACCTCTACAGTGGGGTGGAAGATACCCAGAACCAGAGGTTGATGTTCTCAAATGCTGGTAGTGTTAGTAGGTGGGCAGGGAAACAAAATGGATTGTGGGAAGAAAATCCATTGGACTATGGTTTAGAAGAAGTTAAACAGCTAATAAGCACTAATAGTTGCAACAACTTTTTATTTGATGACAAGAAGACAGAGGAAAGGGTCATGTACTATGCTGACTGTGGCTAA 1005 0.405 MGRAPCCDKANVKKGPWSPEEDAKLKEYIEKHGTGGNWIALPKKVGLKRCGKSCRLRWLNYLRPNIKHGQFSDAEDKIICSLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKRKLMAMMNNSAERKPQQVALLSIFKNSTSSSPLSFMDSNNSYYHPYGSFTGSGSFSCSSTSSLLSGNSSTSASANSFFQPQESFMGPTQFKDINSTFVFGGEAASCSSSDGSCNNQISHVIEPEFGYSGQGHGDATFVEQIGAVNYLYSGVEDTQNQRLMFSNAGSVSRWAGKQNGLWEENPLDYGLEEVKQLISTNSCNNFLFDDKKTEERVMYYADCG* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03352 334 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Rops8g03352 334 Gene3D - 7 68 - -
Rops8g03352 334 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Rops8g03352 334 CDD SANT 16 62 IPR001005 -
Rops8g03352 334 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Rops8g03352 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Rops8g03352 334 PANTHER OS09G0431300 PROTEIN 1 307 - -
Rops8g03352 334 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Rops8g03352 334 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Rops8g03352 334 Gene3D - 69 134 - -
Rops8g03352 334 FunFam Transcription factor RAX3 7 68 - -
Rops8g03352 334 SMART sant 13 64 IPR001005 -
Rops8g03352 334 SMART sant 67 115 IPR001005 -
Rops8g03352 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03352 Rops-Chr8 72295758 72297638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03352 1 119 MYB Transcription Factor Family AT5G57620 85.714 7.74e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops8g03352 Myb_DNA-binding 1.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03352 K09422 - gmx:778084 462.996