Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03351 ATGTCACAAGATTCTGAGGAGATAAAGACGATTGAGCAGTGGAAATGGTCCGAAATGCAAGGCCTTGAGCTTGTGAGTGATGCCACTCATGTTTCTGACCCATATAAAGACACCCCACCAGGGAACCCCGAGGTGAAGGAAGAAGAGGGTGCTACTCAACAAAGGGTAATGGAGGCCTCAGAGCCCAACAAAGATGGTGGTGGTGGTAGTAGTAGTGGGGAGAAGACTGAGAGTGTTCCCTCTGTGGGGTTTGGGGAGCTTTTTAGATTTGCTGATGGGTTGGACTATGTTCTCATGGCAATTGGAACGGTTGGAGCAATTGTACATGGTTGTTCTTTGCCACTGTTTCTTAGGTTCTTTGCGGATCTTGTAAACTCTTTTGGGTCCAATGCTAATAACGTGGATAAGATGACACAGGAAGTGGTGAAGTATGCATTTTACTTCCTTGTGGTGGGTGCTGCAATATGGGCATCCTCATGGGCAGAGATTTCGTGTTGGATGTGGACTGGAGAGCGTCAATCAACAAAGATAAGGATCAAGTACTTAGAAGCTGCGTTGAACCAGGACATTGAGTTCTTTGATACTGAGGTTCGAACATCTGATGTTGTTTTTGCCATCAACTCTGATGCTGTGATGGTCCAGGACGCAATTAGCGAGAAGTTGGGGAATTTCATTCACTACATGGCCACGTTTGTTTCTGGTTTTGTTGTGGGATTCACTGCTGTTTGGCAATTGGCTCTGGTCACCCTTGCTGTAGTCCCTATGATAGCTGTGATTGGAGCCATTCACACCACCACCTTGGCCAAGCTCTCTAGCAAGAGCCAGGAAGCTCTTTCACAAGCTGGCAACATTGTGGAACAGACTGTTGTGCAAATCAGAGTAGTGTTGGCCTTTGTTGGGGAGTCTCGAGCATTGCAAGCCTATTCATCAGCCTTGAAGGTTGCTCAGAAGAATGGATACAAAACTGGGTTTGCAAAGGGAATGGGATTGGGTGCTACTTACTTTGTTGTTTTCTGCTGTTATGCTCTTCTGCTGTGGTATGGAGGCTATCTGGTTAGGCATCACTACACCAATGGAGGACTTGCCATTGCAACCATGTTTGCTGTAATGATTGGTGGACTGGGTTTGGGACAGTCTGCACCCAGCATGGCTGCATTTACAAAGGCTAGGGTTGCTGCTGCAAAGATTTTCCGTATAATTGATCACAAGCCTCGTATAGACCGAAACAGTGAATCTGGTTTGGAACTGGAGACAGTCACTGGACTTGTGGAGCTGATAAATGTGGACTTTGCTTACCCATCCAGGCCAGATGTTCGAATCCTCAATGATTTCACCTTGAATGTGCCTGCTGGCAAGACCATAGCTTTGGTGGGTAGCAGTGGCTCTGGCAAGAGCACAGTTGTCTCCCTCATTGAGAGATTCTATGATCCAACTTCAGGACAAGTTCTGCTAGATGGGCATGACATTAAAACTTTGAAGCTTAGATGGCTAAGGCAGCAGATAGGACTAGTGAGCCAAGAGCCTGCCTTATTTGCTACCACAATTCGAGAAAATATACTGTTGGGCAGGCCTGATGCAAACCAGGTTGAGATTGAAGAAGCTGCCAGGGTTGCTAATGCCCATTCCTTCATCATCAAACTTCCCGACGGCTATGATACCCAGGTAGGAGAAAGAGGGCTACAACTTTCTGGAGGGCAAAAACAAAGAATAGCAATAGCAAGGGCAATGCTAAAAAACCCAGCAATTCTTCTCCTAGATGAGGCAACAAGTGCATTGGACTCTGAATCAGAAAAGCTGGTGCAAGAAGCCCTTGACCGTTTCATGATTGGCAGAACAACTCTTGTAATTGCCCATCGCCTCTCCACTATTCGCAAAGCTGACCTCGTAGCTGTACTTCAGCAAGGAAGCGTTTCTGAAATTGGAACTCATGATGAGCTCTTCTCTAAAGGTGAAAATGGAGTCTACGCCAAGCTTATAAAGATGCAGGAGATGGCGCATGAAACTGCTATGAGTAATGCCAGAAAGAGTAGTGCAAGGCCTTCAAGTGCCAGAAACTCAGTAAGCTCGCCCATAATTGCTCGGAATTCTTCTTATGGCCGATCACCATACTCACGCAGGCTGTCTGATTTCTCTACATCTGATTTTAGTCTGTCCCTTGATGCATCATATCCAAATTACAGGCATGAAAAGCTTGCCTTCAAAGAGCAAGCTAGTTCCTTCTGGAGACTTGCAAAAATGAACTCTCCTGAGTGGCTTTATGCTTTAATTGGTTCTATTGGATCTGTTGTTTGTGGATCCCTTAGTGCGTTCTTTGCTTATGTTCTTAGTGCTGTCCTCAGTGTGTATTACAATCCAGACCACAGATACATGATCCGAGAAATTGAAAAGTACTGCTACTTGTTGATTGGGCTTTCATCAACTGCACTTCTCTTCAATACCTTGCAACACTTCTTCTGGGATATTGTGGGGGAAAATCTTACAAAACGTGTGAGGGAGAAAATGCTGACTGCAGTGCTCAAAAATGAAATGGCATGGTTTGATCAGGAGGAAAATGAGAGTGCCAGGATTGCTGCAAGGCTGGCTCTTGATGCCAACAATGTCAGATCAGCCATTGGAGATCGAATTTCAGTAATTGTGCAGAACACTGCACTTATGCTAGTAGCCTGTACTGCAGGTTTTGTGTTGCAGTGGCGCCTTGCCCTTGTCCTCGTAGCTGTCTTCCCTGTTGTTGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGACAGGTTTCTCTGGTGACCTGGAAGCTGCTCATGCAAAGGCCACACAACTAGCAGGGGAAGCTATTGCCAATGTAAGGACTGTTGCAGCCTTCAATTCAGAAGCAAAAATTGCTGGCCTTTTCACCTCCAACCTCGAAGCCCCACTACAAAGGTGCTTTTGGAAGGGACAGATTTCTGGAAGCGGATATGGGATAGCTCAGTTTGCACTTTATGCTTCTTATGCACTTGGTCTTTGGTATGCTTCTTGGTTAGTGAAGCATGGAATCTCTGACTTCTCTAAAACAATCCGAGTTTTTATGGTCCTCATGGTCTCTGCCAATGGTGCTGCTGAAACTTTAACACTGGCTCCTGACTTCATCAAGGGAGGTAGAGCCATGAGGTCAGTCTTTGATCTCCTTGACCGTAGAACTGAAATTGAGCCAGATGATCAAGATGCTACTCCTGTTCCTGATCGTCTTCGTGGTGAAGTTGAACTTAAGCATGTGGACTTCTCTTATCCTACTCGCCCAGATATGCCAGTTTTCCGTGACCTTAATCTTCGTGCTAGAGCCAGTAAAACTCTTGCACTTGTAGGACCTAGTGGCTGTGGTAAGAGCTCAGTGATTGCACTTATACAAAGATTCTATGATCCAACATCTGGTAGGGTCATGATTGATGGGAAGGATATAAGGAAATACAACCTCAAGTCCTTAAGAAGGCACATTTCAGTGGTACCTCAGGAGCCATGCCTGTTTGCTACTACTATTTATGAAAACATTGCTTATGGGCATGACTCAGCTACTGAAGCTGAGATAATTGAAGCTGCAACTCTTGCCAATGCTCATAAGTTCATATCTGCATTGCCTGATGGATACAAAACATTTGTTGGGGAGAGAGGTGTTCAATTGTCAGGAGGACAAAAGCAAAGAATAGCAGTTGCAAGGGCTTTTTTGAGGAAGGCAGAGCTTATGCTTCTTGATGAGGCAACAAGTGCACTTGATGCTGAATCTGAGAGGTCTGTTCAGGAGGCACTAGACCGTGCCTCTTCAGGCAAAACAACTATTATTGTTGCACACAGGCTATCAACTATCAGGAATGCCAATGTGATTGCTGTGATTGATGATGGGAAAGTAGCTGAGCAAGGTTCCCATTCACAGTTGTTGAAAAATTACCCGGATGGGATTTATGCACGCATGATTCAATTACAAAGGTTCACGCACAGCCAAGTCATTGGGATGGCCTCTGGTTCAAGTTCTTCAACAAAACCAAAAGATGATGAAAGAGAAGGATAG 4035 0.4528 MSQDSEEIKTIEQWKWSEMQGLELVSDATHVSDPYKDTPPGNPEVKEEEGATQQRVMEASEPNKDGGGGSSSGEKTESVPSVGFGELFRFADGLDYVLMAIGTVGAIVHGCSLPLFLRFFADLVNSFGSNANNVDKMTQEVVKYAFYFLVVGAAIWASSWAEISCWMWTGERQSTKIRIKYLEAALNQDIEFFDTEVRTSDVVFAINSDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGAIHTTTLAKLSSKSQEALSQAGNIVEQTVVQIRVVLAFVGESRALQAYSSALKVAQKNGYKTGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHYTNGGLAIATMFAVMIGGLGLGQSAPSMAAFTKARVAAAKIFRIIDHKPRIDRNSESGLELETVTGLVELINVDFAYPSRPDVRILNDFTLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIRENILLGRPDANQVEIEEAARVANAHSFIIKLPDGYDTQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEMAHETAMSNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASYPNYRHEKLAFKEQASSFWRLAKMNSPEWLYALIGSIGSVVCGSLSAFFAYVLSAVLSVYYNPDHRYMIREIEKYCYLLIGLSSTALLFNTLQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLVAVFPVVVAATVLQKMFMTGFSGDLEAAHAKATQLAGEAIANVRTVAAFNSEAKIAGLFTSNLEAPLQRCFWKGQISGSGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFDLLDRRTEIEPDDQDATPVPDRLRGEVELKHVDFSYPTRPDMPVFRDLNLRARASKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHISVVPQEPCLFATTIYENIAYGHDSATEAEIIEAATLANAHKFISALPDGYKTFVGERGVQLSGGQKQRIAVARAFLRKAELMLLDEATSALDAESERSVQEALDRASSGKTTIIVAHRLSTIRNANVIAVIDDGKVAEQGSHSQLLKNYPDGIYARMIQLQRFTHSQVIGMASGSSSSTKPKDDEREG* 1345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03351 1344 CDD ABC_6TM_Pgp_ABCB1_D1_like 99 396 - -
Rops8g03351 1344 FunFam ABC transporter B family member 19 1044 1066 - -
Rops8g03351 1344 SUPERFAMILY ABC transporter transmembrane region 87 407 IPR036640 GO:0005524|GO:0016020
Rops8g03351 1344 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1069 1317 IPR027417 -
Rops8g03351 1344 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1078 1314 IPR003439 GO:0005524
Rops8g03351 1344 PANTHER ABC TRANSPORTER B FAMILY 69 804 IPR039421 -
Rops8g03351 1344 Gene3D ABC transporter type 1, transmembrane domain 734 1043 IPR036640 GO:0005524|GO:0016020
Rops8g03351 1344 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 423 659 IPR003439 GO:0005524
Rops8g03351 1344 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 414 662 IPR027417 -
Rops8g03351 1344 SUPERFAMILY ABC transporter transmembrane region 742 1062 IPR036640 GO:0005524|GO:0016020
Rops8g03351 1344 Pfam ABC transporter 441 590 IPR003439 GO:0005524
Rops8g03351 1344 Gene3D - 413 663 IPR027417 -
Rops8g03351 1344 Gene3D - 1067 1318 IPR027417 -
Rops8g03351 1344 MobiDBLite consensus disorder prediction 1325 1344 - -
Rops8g03351 1344 CDD ABC_6TM_Pgp_ABCB1_D2_like 744 1060 - -
Rops8g03351 1344 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 100 388 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops8g03351 1344 MobiDBLite consensus disorder prediction 40 54 - -
Rops8g03351 1344 CDD ABC_MTABC3_MDL1_MDL2 423 662 - -
Rops8g03351 1344 FunFam ABC transporter B family member 1 1068 1318 - -
Rops8g03351 1344 Gene3D ABC transporter type 1, transmembrane domain 1044 1321 IPR036640 GO:0005524|GO:0016020
Rops8g03351 1344 FunFam ABC transporter B family member 1 413 663 - -
Rops8g03351 1344 ProSitePatterns ABC transporters family signature. 1217 1231 IPR017871 GO:0005524|GO:0016887
Rops8g03351 1344 FunFam ABC transporter B family member 1 86 421 - -
Rops8g03351 1344 Gene3D ABC transporter type 1, transmembrane domain 86 676 IPR036640 GO:0005524|GO:0016020
Rops8g03351 1344 SMART AAA_5 1105 1297 IPR003593 GO:0016887
Rops8g03351 1344 SMART AAA_5 450 636 IPR003593 GO:0016887
Rops8g03351 1344 MobiDBLite consensus disorder prediction 27 78 - -
Rops8g03351 1344 Pfam ABC transporter transmembrane region 99 372 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops8g03351 1344 Pfam ABC transporter transmembrane region 756 1025 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops8g03351 1344 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 755 1042 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops8g03351 1344 FunFam ABC transporter B family member 1 734 1043 - -
Rops8g03351 1344 ProSitePatterns ABC transporters family signature. 562 576 IPR017871 GO:0005524|GO:0016887
Rops8g03351 1344 CDD ABC_MTABC3_MDL1_MDL2 1078 1317 - -
Rops8g03351 1344 Pfam ABC transporter 1097 1245 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03351 Rops-Chr8 72231490 72237669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03351 75 1339 Calmodulin-binding Proteins AT2G36910 89.652 0.0 2323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03351 K05658 - gmx:100814667 2358.56