Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03335 ATGACCACTGCCAACTTCACGACGTCACTTGATGAAACAAATGAAGTATGTGCTCGAGTGATGCTTTGGCCACTGATTCCTCGAGGATACGCTTCTCCCTGGAGCTGGGCATTCCAAGAATACTTGGGTCGAGGTCCTCCTCCTGGTTCCGGACGCTGCTTCAATTGTGGCCTTGATGGTCATCGGGCCCGAGATTGCAAAGCTGGGGGTTGGAAGAACAAGTGTTACCAATGTGGGGACAGAGACCAGATCACCGGCAACAAAAACTATGTTGATGGTGTGCAAACCTACTCCACGACAACCTTCAGTGCAAATGCTCCTAACTTCATGGCCAAGGATGTTGGGTTTGAGAACACAGCAGAAGCTGCGAAGCACCAAGCCGTTGCACTTAGGGTAACAGCAGATCAAGCCGTGTTTTTCAACTGTCAGATGGATTGCATTACCTGTTGA 450 0.5 MTTANFTTSLDETNEVCARVMLWPLIPRGYASPWSWAFQEYLGRGPPPGSGRCFNCGLDGHRARDCKAGGWKNKCYQCGDRDQITGNKNYVDGVQTYSTTTFSANAPNFMAKDVGFENTAEAAKHQAVALRVTADQAVFFNCQMDCITC* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03335 149 Gene3D - 75 146 IPR012334 -
Rops8g03335 149 SUPERFAMILY Retrovirus zinc finger-like domains 43 84 IPR036875 GO:0003676|GO:0008270
Rops8g03335 149 ProSiteProfiles Zinc finger CCHC-type profile. 52 67 IPR001878 GO:0003676|GO:0008270
Rops8g03335 149 PANTHER PECTINESTERASE 82 145 - -
Rops8g03335 149 SMART c2hcfinal6 52 68 IPR001878 GO:0003676|GO:0008270
Rops8g03335 149 Pfam Pectinesterase 81 146 IPR000070 GO:0030599|GO:0042545
Rops8g03335 149 SUPERFAMILY Pectin lyase-like 82 144 IPR011050 -
Rops8g03335 149 Gene3D - 43 73 - -
Rops8g03335 149 Pfam Zinc knuckle 52 67 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03335 Rops-Chr8 72037493 72038228 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03335 80 145 Carbohydrate Esterase AT3G05610 56.061 3.66e-20 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03335 K12896 K01051 gmx:100820068 106.301