Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03334 ATGGATCACATAATTGCACATGCAAGAACCAGGCAAAAATTGTCAAGTAAAGGATCATTGAAAATGAAAGAAACACAAGATCAGAAGGTAGATTGTTGTGCATCTTCTTTACCAACTGAGACTGAAGAGTCAACTACAAATCAAGCACCAAAAGTTATCACAATCCTATCCACCGGACAGTCATCCCTAATGCAATTTATCTCAACCCCAGGACTTCGTACAACTGTAGATCAACCAACACCTGAGTCTGCTTCAGCTGCAAAGGAAGCAACACCTCTGTTTCCCACACCTATTGTTATGGTAACAAGAAGTGGGATTTGTTTGCTAAGGCTGCTGCTTCTGAAGTTGTTTGATGTCAAGTCAGCTGCGATGAGGTGTTTTTCATTCTACAATGGAGAGAAGAAAGATGACCCTAAAGGCTTGCAATCAGCATCAGGTCTGTCAGATAGTTCCATCAATGTTGAGGCTGATGTTAGAAGATCTGGTTCTGAAGATGTCTCAGAAAATGGCAGCACAGAATCCCTCAGGAGGAATGCAATTCCAAATTTGTCCCAAAGACCTAGCAACCTTAGAGTGTTTACTGTATCTGAACTGAAATCTGTCACAAAAAATTTCAGTCGCTCTGTTATGATTGGAGAGGGCGGGTTTGGGTGTGTCTATCAGGGATTAATAAGAAGTGCAGAGGACCCATCTAGAAGAATTGAAGTTGCAGTTAAACAACTTAGTAAAACAGGAACGCAAGGGCACAGGGAATGGGTGACAGAAGTGAATGTGTTGGGCATTGTTGAGCATCCCAATCTTGTGAAACTAGTGGGCTACTGTGCTGATGATGATGAAAGGGGAATCCAGCGGCTTCTGATTTATGAATACATGCCAAACAGAAGTGTGGAACACCATTTATCTCACCGAGCAGAGACTCCTCTCCCATGGACTAGGAGATTAAAAATAGCCCAAGATGCAGCTCGTGGATTAACATACCTGCATGAGGAAATGGATTTTCAGATAATTTTCAGAGATTTCAAATCGTCAAATATCCTTTTGGATGAACAATGGAATGCAAAGCTATCAGACTTTGGGTTAGCAAGACTGGGACCATCAGATGGACTAACTCATGTCTCAACAGCGGTTGTAGGAACAATGGGATATGCAGCTCCTGAATATATTCAAACTGGACGTCTCACATCAAAAAATGATGTCTGGAGCTATGGTGTCTTCCTTTATGAACTCATTACTGGAAGGCGCCCTTTAGATCGAAATCGCCCAAAGGGTGAGCAGAAGCTGTTGGAATGGATAAGGCCATACCTATCAGATGGAAAGAAATTTCAAATAATATTGGATCCAAGACTTGATAAGAAACAAGTCATCAAGTCAGCTCAGAGACTTGCTATGATAGCTAACCGATGCTTGGTCAAAAACCCAAAGAACCGTCCAAAGATGAGTGAGGTATTGGAAATGGTGAATGGAATAGTAGAATCTTCATCCAGTGCTAGTCCACAGTTACCCTTGAAGAGTGTGGCAACAGTGAAAGCTTCCCATGACACTGAAATAAACAAGAAGAAAAGGACCATGGATCAGAAGCCTGGAGAAAGCAATTGGTTTGTGAGGATGTGGAGACCAAAGCTTGTAAGAACATGTTGA 1638 0.42 MDHIIAHARTRQKLSSKGSLKMKETQDQKVDCCASSLPTETEESTTNQAPKVITILSTGQSSLMQFISTPGLRTTVDQPTPESASAAKEATPLFPTPIVMVTRSGICLLRLLLLKLFDVKSAAMRCFSFYNGEKKDDPKGLQSASGLSDSSINVEADVRRSGSEDVSENGSTESLRRNAIPNLSQRPSNLRVFTVSELKSVTKNFSRSVMIGEGGFGCVYQGLIRSAEDPSRRIEVAVKQLSKTGTQGHREWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLIYEYMPNRSVEHHLSHRAETPLPWTRRLKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYIQTGRLTSKNDVWSYGVFLYELITGRRPLDRNRPKGEQKLLEWIRPYLSDGKKFQIILDPRLDKKQVIKSAQRLAMIANRCLVKNPKNRPKMSEVLEMVNGIVESSSSASPQLPLKSVATVKASHDTEINKKKRTMDQKPGESNWFVRMWRPKLVRTC* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03334 545 MobiDBLite consensus disorder prediction 135 180 - -
Rops8g03334 545 ProSiteProfiles Protein kinase domain profile. 205 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g03334 545 CDD STKc_IRAK 211 489 - -
Rops8g03334 545 SUPERFAMILY Protein kinase-like (PK-like) 182 486 IPR011009 -
Rops8g03334 545 MobiDBLite consensus disorder prediction 143 157 - -
Rops8g03334 545 Gene3D Transferase(Phosphotransferase) domain 1 291 509 - -
Rops8g03334 545 Pfam Protein tyrosine and serine/threonine kinase 210 484 IPR001245 GO:0004672|GO:0006468
Rops8g03334 545 ProSitePatterns Protein kinases ATP-binding region signature. 211 239 IPR017441 GO:0005524
Rops8g03334 545 PANTHER OS01G0588500 PROTEIN-RELATED 153 488 - -
Rops8g03334 545 Gene3D Phosphorylase Kinase; domain 1 178 290 - -
Rops8g03334 545 FunFam Serine/threonine-protein kinase PCRK2 291 499 - -
Rops8g03334 545 FunFam Serine/threonine-protein kinase BIK1 172 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03334 Rops-Chr8 72031099 72034838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03334 124 501 Glycoside Hydrolase AT3G07070 41.927 4.34e-89 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops8g03334 PK_Tyr_Ser-Thr 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03334 - - gsj:114400704 771.155