Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03317 ATGGAAGCAACTAGAGTGAGCAATGGCTACCACCAAAGCCAAAACGGGTCCTTGTGCTTGAAGAGCAATAATGCTAGCAGTGACCCATTGAATTGGGGTGTGGCGGCGGAGTCAATGAAGGGGAGCCACTTGGATGAGGTGAAGCGCATGGTGGAGGAGTACCGGAATCCCGTGGTCCGGATTGGCGGCGAGACGCTGACGATCTCGCAGGTGGCTGCCATTGCCACACGTGACCAAGACGTGAGTTTGGAGCTGTCGGAATCTGCTAGGGCTGGTGTTAAGGCAAGCAGTGATTGGGTGATGAATAGCATGAACAATGGCACTGACAGTTACGGTGTCACCACCGGCTTCGGTGCCACCTCTCACCGTAGAACCAAACAAGGTGGTGCTTTGCAGAAAGAGCTCATCAGGTTTTTGAACGCTGGAATATTTGGCAATGGTACAGAGTCATGCCACACACTGCCACATTCTGCAACCAGAGCAGCCATGCTTGTGAGAATCAACACTCTTCTCCAAGGTTACTCAGGCATCAGATTTGAAATCTTAGAAGCCATCACCAAGCTCCTTAACAACAACATTACCCCATGTTTACCACTTCGTGGTACAATCACAGCTTCTGGGGATCTGGTCCCTCTTTCTTACATTGCCGGTTTGCTTACTGGCAGACCAAACTCAAAGGCTGTGGGACCCTCTGGAGAGGTACTTAATGCCAAGGAAGCTTTCCAATTGGCTGGCATCAACTCTGAGTTCTTTGAATTACAACCCAAGGAAGGCCTTGCACTTGTTAATGGCACTGCTGTTGGTTCTGGCTTAGCTTCTATTGTTCTCTTTGAGGCAAACATACTAGCTGTGTTGTCTGAAGTTCTGTCAGCTATTTTTGCTGAAGTGATGCAAGGGAAACCTGAATTCACTGACCATTTGACACATAAGCTAAAGCACCACCCTGGCCAAATTGAGGCTGCTGCTATTATGGAACACATTTTGGATGGAAGTTCATACATGAAAGATGCTAAGAAGTTGCATGAGATGGATCCATTGCAAAAGCCAAAACAAGATCGATATGCCCTTAGAACTTCACCACAATGGCTTGGTCCTCTGATTGAAGTGATTAGATTCTCAACCAAGTCAATTGAGAGAGAGATTAACTCTGTGAATGACAACCCTTTGATTGATGTTTCCAGGAACAAGGCCTTGCATGGTGGTAATTTCCAAGGTACCCCTATTGGAGTATCTATGGACAACACACGTTTGGCTCTTGCATCGATTGGCAAACTCATGTTTGCTCAGTTCTCTGAGCTTGTCAATGATTTGTACAACAATGGGTTGCCTTCAAATCTCTCTGCTAGTAGAAATCCCAGCCTGGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCATCTTATTGCTCTGAACTCCAATATCTTGCAAATCCAGTCACAACCCATGTCCAAAGTGCTGAGCAGCACAACCAAGATGTGAACTCTTTGGGTTTGATTTCTTCTAGAAAAACAAACGAAGCCATCGAGATCCTTAAGCTCATGTCTTCCACTTTCTTGATTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAACTTGAAAAGCTCGGCCAAGAACACCGTAAGCCAAGTTGCCAAGAGGACTCTTACCACAGGTGTCAATGGAGAACTCCACCCTTCCAGATTTTGTGAAAAAGATTTGCTGAAAGTGGTTGATAGGGAGTATGTATTTGCCTATATTGATGATCCCTGCAGTGCTACATACCCATTGATGCAGAAACTCAGGCAAGTGCTTGTGGATCATGCATTGGTAAATGGAGAAAATGAGAAGAACTTGAACACATCAATCTTCCAAAAGATTGCAACTTTTGAGGATGAGTTGAAGGCTCTCTTGCCAAAGGAGGTAGAAAGTGCAAGGGCTGCATATGAAAGTGGCAATCCAGAAATTCCAAACAAGATCAAGGAATGCAGATCTTACCCACTTTACAAGTTTGTGAGAGAGGAGTTGGGGACAGGGTTGCTAACTGGAGAAAAGGTCAGGTCACCAGGTGAGGAGTTTGACAAATTGTTCACAGCAATGTGCCAGGGTAAAATTATTGATCCTCTTTTGGAATGCCTTGGGGAGTGGAACGGTGCTCCTCTTCCAATTTGTTAA 2160 0.4565 MEATRVSNGYHQSQNGSLCLKSNNASSDPLNWGVAAESMKGSHLDEVKRMVEEYRNPVVRIGGETLTISQVAAIATRDQDVSLELSESARAGVKASSDWVMNSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESCHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAKEAFQLAGINSEFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKDAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDLYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLIALCQAIDLRHLEENLKSSAKNTVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYVFAYIDDPCSATYPLMQKLRQVLVDHALVNGENEKNLNTSIFQKIATFEDELKALLPKEVESARAAYESGNPEIPNKIKECRSYPLYKFVREELGTGLLTGEKVRSPGEEFDKLFTAMCQGKIIDPLLECLGEWNGAPLPIC* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03317 719 FunFam Phenylalanine ammonia-lyase 266 575 - -
Rops8g03317 719 FunFam Phenylalanine ammonia-lyase 19 265 - -
Rops8g03317 719 Gene3D - 532 653 IPR023144 -
Rops8g03317 719 Pfam Aromatic amino acid lyase 66 540 IPR001106 -
Rops8g03317 719 SUPERFAMILY L-aspartase-like 28 719 IPR008948 GO:0003824
Rops8g03317 719 FunFam Phenylalanine ammonia-lyase 532 653 - -
Rops8g03317 719 CDD PAL-HAL 64 529 IPR001106 -
Rops8g03317 719 Gene3D - 19 265 IPR024083 -
Rops8g03317 719 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 201 217 IPR022313 GO:0016841
Rops8g03317 719 NCBIfam phenylalanine ammonia-lyase 28 708 IPR005922 GO:0005737|GO:0006559|GO:0016841
Rops8g03317 719 PANTHER HISTIDINE AMMONIA-LYASE 24 719 IPR001106 -
Rops8g03317 719 Gene3D Fumarase/aspartase (Central domain) 266 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03317 Rops-Chr8 71944742 71948134 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03317 8 719 Monolignol Biosynthesis Gene Families AT2G37040 82.548 0.0 1256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03317 K10775 - gmx:100787902 1312.75