Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03316 ATGGAAACAACTAGAGTGATCAATGACTACCACCAAAGCCAAAACGGGTCCTTGTGCTTGAAGAGCAATACTAGCAGTGACCCCTTGAATTGGGGAGTGGCGGCGGAGTCAATGAAGGGGAGCCACTTGGATGAGGTGAAGCGCATGGTGGAAGAGTACCGAAAGCCCGTGGTCCGGCTTGGTGGCGAGACGCTGACGATCTCGCAGGTGGCTGCCATCGCCACACGTGACCAAGACGTGAGTGTGGAGCTGTCGGAGACTGCTAGGGCTGGCGTGAAGGCAAGCAGTGACTGGGTGATGAATAGCATGAACAACGGCACTGACAGTACCGGTGTCACCACTGGCTTCGGTGCCACCTCTCACCGTAGAACCAAACAAGGTGGTGCTTTGCAGAAAGAGCTCATCAGGTTTTTGAACGCTGGAATATTTGGCAATGGTGCTGAGTCATGGCACACACTGCCACATTCTGCAACCAGAGCAGCCATGCTTGTGAGAATCAACACTCTTCTTCTCCAAGGTTACTCAGGCATCAGATTTGAAATCTTAGAAGCCATCACCAAGCTCCTTAACAACAACATTACCCCATGCTTACCACTTCGTGGTACAATCACTGCTTCTGGGGATCTGGTCCCTCTTTCTTACATTGCTGGTTTGCTTACTGGCAGACCAAACTCAAAGGCTGTGGGACCCTCTGGAGAGGTACTTAATGCCAAGGAAGCTTTCCAATTGGCTGGCATCAACTCTGACTCTGAGTTCTTTGAATTACAGCCGAAGGAAGGCCTTGCACTTGTTAATGGCACTACTGTTGGTTCTGGCTTAGCTTCTATTGTTCTCTTTGAGGCAAATATACTAGCTGTGTTGTCTGAAGTTCTATCCGCTATTTTTGCTGAAGTGATGCAAGGGAAACCTGAATTCACTGACCATTTGACACATAAGCTAAAGCACCACCCTGGCCAAATTGAGGCTGCTGCTATTATGGAGCACATTCTGGATGGAAGTTCGTACATGAAAGCTGCCAAGAAGTTGCATGAGATGGATCCCTTGCAAAAGCCAAAACAAGATCGATATGCCCTTAGAACTTCACCACAGTGGCTTGGTCCTCTGATTGAAGTGATTAGATTCTCAACCAAGTCAATTGAGAGAGAGATTAACTCTGTGAATGACAACCCTTTGAATGATGTTTCCAGGAACAAGGCCTTGCATGGTGGTAATTTCCAAGGAACCCCTATTGGAGTCTCTATGGACAACACACGTTTGGCTCTTGCATCAATTGGCAAACTCATGTTTGCTCAATTCTCAAAGCTTGTCAATGATTTTTACAATAATGGGTTGCCTTCTAATATCTCTGCTAGTAGAAATCCCAGCTTGGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCATCTTATTGCTCTGAACTCCAGTATCTTGCAAATCCAGTCACAACCCATGTCCAAAGTGCTGAGCAGCACAACCAAGATGTGAACTCTTTGGGTTTGATTTCGTCTAGGAAAACAAACGAATCCATCGAGATCCTTAAGCTCGTGTCTTCCACTTTCTTGATTGCACTTTGCCAAGCAATTGACTTAAGGCATTTGGAGGAGAACTTGAAAAGCTCCGTCAAGAACACTGTAAGCCAAGTTGCCAAGAGGACTCTTACCACAGGTGTCAATGGAGAACTCCATCCTTCAAGACTTTGA 1701 0.4674 METTRVINDYHQSQNGSLCLKSNTSSDPLNWGVAAESMKGSHLDEVKRMVEEYRKPVVRLGGETLTISQVAAIATRDQDVSVELSETARAGVKASSDWVMNSMNNGTDSTGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGAESWHTLPHSATRAAMLVRINTLLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAKEAFQLAGINSDSEFFELQPKEGLALVNGTTVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEMDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLNDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSKLVNDFYNNGLPSNISASRNPSLDYGFKGAEIAMASYCSELQYLANPVTTHVQSAEQHNQDVNSLGLISSRKTNESIEILKLVSSTFLIALCQAIDLRHLEENLKSSVKNTVSQVAKRTLTTGVNGELHPSRL* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03316 566 Gene3D - 19 267 IPR024083 -
Rops8g03316 566 Pfam Aromatic amino acid lyase 65 542 IPR001106 -
Rops8g03316 566 PANTHER HISTIDINE AMMONIA-LYASE 23 566 IPR001106 -
Rops8g03316 566 FunFam Phenylalanine ammonia-lyase 268 559 - -
Rops8g03316 566 NCBIfam phenylalanine ammonia-lyase 27 565 IPR005922 GO:0005737|GO:0006559|GO:0016841
Rops8g03316 566 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 201 217 IPR022313 GO:0016841
Rops8g03316 566 FunFam Phenylalanine ammonia-lyase 18 267 - -
Rops8g03316 566 SUPERFAMILY L-aspartase-like 27 565 IPR008948 GO:0003824
Rops8g03316 566 Gene3D Fumarase/aspartase (Central domain) 269 533 - -
Rops8g03316 566 CDD PAL-HAL 63 531 IPR001106 -
Rops8g03316 566 Gene3D - 534 565 IPR023144 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03316 Rops-Chr8 71902558 71905502 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03316 7 566 Monolignol Biosynthesis Gene Families AT2G37040 82.312 0.0 964
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03316 K10775 - gmx:100787902 999.193