Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03310 ATGCTTTTTCAGGAATTTACAATGAAAAAAACTAGCTATCTAGCTCCAAATGAGATGATGGCATGTGTGGAGTCAAAAGCGAGACTGAAAGAGGTGGAGAAGTGTTTGGATCCTCAGCTATGGCATGTCTGTGCGGGAGGGATGGTACAAATGCCACCGGTGAACACTAAAGTCTTCTACTTCCCCCAGGGACATGCTGAACATGCATGTGAACCCGTGGACTTCAGGGCATACCCCAAAATTCCACCTTTCATTCAATGCAGAGTTGCAGCTACCAAATACATGGCTGATCCTGAGACAGATGAGGTTTATGCCAAACTTAGGCTTGTTCCTCTTCACGGTAATGAGGCTGATTTTGAAGATGATGGTGTTGGAGTCATCAACAACGGGTCTGAAAACAAGGATAAACTCCCTTCCTTTGCAAAAACCTTGACGCAATCTGATGCCAACAATGGTGGTGGCTTTTCTGTTCCTAGATATTGTGCAGAGACAATTTTTCCTCGTTTGGACTATTCAGCTGACCCTCCTGTTCAAACCATCCTTGTTAAAGATGTTCATGGAGAAACATGGAAATTCAGGCACATTTATAGAGGCACGCCAAGGCGGCATCTATTGACCACAGGATGGAGTACTTTTGTCAATCACAAGAAGCTAGTTGCAGGAGATTCAATTGTGTTTTTAAGAGCTGAAAATGGAGATCTCTGTGTTGGAATTCGGCGCGCTAAAAAGGAGCTTTCATCAGGGTGGAATCCAGCAGGTGGAATTCGTCCTGTACCTTATGGAGGAGGATTTGCAGCATTTTTGGGTGAGAATGATAACCAATACCTAAGAAATGGTCATGGCAATGGATTGAGACCAAGTGTGACCCTAATGGGTAGGGGGAAGGTGAAGGCCCAAGCAGTTATTGAAGCTGCAACACTTGCTGCTAATATGCAACCCTTTGAAGTGGTTTACTACCCTCGTGCAAGTACTCCAGAGTTTTGTGTGAAGGCCTCTTTAGTTAGAGCAGCACTACAAGTTAGGTGGTGTCCTGGAATGAAGTTCAAGATGCCCTTTGAAACTGAGGACTCTTCTCGGATTAGTTGGTTTATGGGAACCATATCTTCTGTTCAGGTTGCTGATCCAAGATGGCCTAACTCTCCTTGGAGACTTCTCCAGGTTACATGGGATGAACCAGAGTTACTTCAAAATGTTAAAAGGGTGAGCCCTTGGCTGGTTGAAATCGTATCAAACCTGCCCAACATCCATTTTTCCCCATTCTCACCACCACGGAAGAAATTGAGATTACCCCAACACCCAGAATTTTCCCTTGATAGCCAAATTTCAGTACCAACATTTCCCAGCAACTTTCTTGGTCCCAGCAATCATCCCTTTGGTCGTTTACCTGAAAGTAGTCCTGCTGGTATGCAGGGAGCCAGGCATACTCATTATGGTATATCCTTATCGGATCTCCACTTCAATAAACCGCAGTCAGGTCTATTTTCAGCTGGTTTCTCACCATTTGATCATACTGCTACACCAATGAGGGTCCCCAATAACCCACCATTGCAAAAGCCAAGCACTAGTGAGAACATCTCTTGCTTACTATCCATGGCAAGTTCTACTCAATCCCCAAAGAAAGTGGATGATGTTAAGGCACCCCAGTTGGTGCTTTTTGGCCAAACAATTCTCACCGAGCAGCAAATCTCTCAGAGCACCTCTGGAAACAGTTCACCAGATGCAAATGCTGATAAAATGAATAATTTTTCTGATGGTTCTGGATCTGCTCTTCATCAACAAGGCCTGCAAGAACGCCAACAAGAAAGTGTGGCTAGTTTGGAGACAGGTCACTGTAAAGTTTTTATGGAATCAGAAGATGTAGGTCGCACTATGGACCTCTCGTTGCTTGGTTCTTATGATGAACTATATAGAAAGCTTGCAGACATGTTTGGCATACAAAAATCTGGGGTGCTAAGTCATGTGCTTTACCATGATATAACAGGAGCAGTCAAACACGTTGGAGATGAAACATTCAGTGACTTCACCAAAACAGCTAGGAGGTTGAGCATTTTAACAGATTCCAGCAGTGACAATGGAGGAGTGTAG 2085 0.4422 MLFQEFTMKKTSYLAPNEMMACVESKARLKEVEKCLDPQLWHVCAGGMVQMPPVNTKVFYFPQGHAEHACEPVDFRAYPKIPPFIQCRVAATKYMADPETDEVYAKLRLVPLHGNEADFEDDGVGVINNGSENKDKLPSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILVKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKELSSGWNPAGGIRPVPYGGGFAAFLGENDNQYLRNGHGNGLRPSVTLMGRGKVKAQAVIEAATLAANMQPFEVVYYPRASTPEFCVKASLVRAALQVRWCPGMKFKMPFETEDSSRISWFMGTISSVQVADPRWPNSPWRLLQVTWDEPELLQNVKRVSPWLVEIVSNLPNIHFSPFSPPRKKLRLPQHPEFSLDSQISVPTFPSNFLGPSNHPFGRLPESSPAGMQGARHTHYGISLSDLHFNKPQSGLFSAGFSPFDHTATPMRVPNNPPLQKPSTSENISCLLSMASSTQSPKKVDDVKAPQLVLFGQTILTEQQISQSTSGNSSPDANADKMNNFSDGSGSALHQQGLQERQQESVASLETGHCKVFMESEDVGRTMDLSLLGSYDELYRKLADMFGIQKSGVLSHVLYHDITGAVKHVGDETFSDFTKTARRLSILTDSSSDNGGV* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03310 694 FunFam Auxin response factor 138 242 - -
Rops8g03310 694 Pfam Auxin response factor 304 386 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Rops8g03310 694 CDD B3_DNA 138 240 IPR003340 GO:0003677
Rops8g03310 694 FunFam Auxin response factor 342 414 - -
Rops8g03310 694 Pfam B3 DNA binding domain 140 241 IPR003340 GO:0003677
Rops8g03310 694 Gene3D - 605 691 - -
Rops8g03310 694 Gene3D - 138 242 IPR015300 -
Rops8g03310 694 ProSiteProfiles PB1 domain profile. 608 691 IPR000270 GO:0005515
Rops8g03310 694 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 33 687 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops8g03310 694 ProSiteProfiles B3 DNA-binding domain profile. 140 242 IPR003340 GO:0003677
Rops8g03310 694 SMART B3_2 140 242 IPR003340 GO:0003677
Rops8g03310 694 Gene3D - 341 413 - -
Rops8g03310 694 MobiDBLite consensus disorder prediction 561 602 - -
Rops8g03310 694 SUPERFAMILY DNA-binding pseudobarrel domain 135 242 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03310 Rops-Chr8 71721133 71725225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03310 32 691 B3 DNA Binding Superfamily AT4G30080 57.933 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops8g03310 B3 4.9e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03310 - - gmx:100791442 1058.51