Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03305 ATGACAAAAGACATCGAAACTGCAGCTCAAGGTAGTTTACCCCACAAGGACTACCATGACCCACCACCTGCGCCACTCTTTGACGCCGCCGAGCTACGCAAGTGGTCCTTTTACAGAGCCCTCATCGCCGAGTTCGTCGCCACTTTGCTCTTCCTTTACGTCTCCGTTTTGACCGTCATTGGCTACAACAGCCAAACGGATCCCGCTCACAACCCCACCGGCGACGCTGCTTGTAACGGCGTTGGCATTCTCGGAATCGCTTGGGCTTTCGGCGGCATGATTTTTGTCCTTGTTTACTGCACCGCCGGCATATCTGGGGGTCATATAAATCCGGCGGTGACGTTTGGGTTGTTCCTGGGGAGGAAGGTGTCGTTGATTAGAGCTATATTGTACATGGTGGCTCAGTGTTTGGGGGCCATAAGTGGTGTTGGGTTGGTGAAGGCTTTTCAGAAGAGTTACTATAACAGGTACAAAGGTGGTGCCAACATGTTATCTGATGGTTACAGCAAAGGAACTGGCTTGGGAGCTGAGATTATTGGCACCTTTGTTCTTGTCTACACAGTCTTCTCTGCCACCGATCCCAAGAGAAACGCCAGAGATTCCTTTGTTCCCGTTTTGGCACCGCTTCCAATTGGGTTTGCAGTGTTCATGGTCCACCTAGCCACCATCCCTATCACCGGAACAGGTATCAACCCTGCTAGAAGCTTCGGTGCTGCTGTTATATACAACAATGAGAAAGCATGGGATGACCAGTGGATTTTCTGGGTTGGACCCTTTATTGGTGCCGCCATTGCTGCAATTTACCACCAGTACGTGTTGAGAGCTCAAGCAGCGAAGGCTTTGGGTTCTTTCAGGAGCTCCTCAAACCTTTAA 873 0.5074 MTKDIETAAQGSLPHKDYHDPPPAPLFDAAELRKWSFYRALIAEFVATLLFLYVSVLTVIGYNSQTDPAHNPTGDAACNGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLGRKVSLIRAILYMVAQCLGAISGVGLVKAFQKSYYNRYKGGANMLSDGYSKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSFVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAQAAKALGSFRSSSNL* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03305 290 PRINTS Major intrinsic protein family signature 176 194 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops8g03305 290 PRINTS Major intrinsic protein family signature 252 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops8g03305 290 PRINTS Major intrinsic protein family signature 212 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops8g03305 290 PRINTS Major intrinsic protein family signature 127 146 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops8g03305 290 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops8g03305 290 PRINTS Major intrinsic protein family signature 90 114 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops8g03305 290 FunFam Probable aquaporin PIP1-2 24 288 - -
Rops8g03305 290 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 4 284 IPR034294 -
Rops8g03305 290 ProSitePatterns MIP family signature. 108 116 IPR022357 -
Rops8g03305 290 Pfam Major intrinsic protein 31 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops8g03305 290 CDD MIP 39 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops8g03305 290 NCBIfam MIP family channel protein 43 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Rops8g03305 290 SUPERFAMILY Aquaporin-like 31 274 IPR023271 -
Rops8g03305 290 Gene3D Glycerol uptake facilitator protein. 24 290 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03305 Rops-Chr8 71657242 71658760 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03305 1 286 Major Intrinsic Protein MIP AT5G60660 80.420 1.18e-167 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03305 K09872 - gmx:100807883 502.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03305 8 71657242 71658760 Rops6g02444 6 44651960 44654963 ECH
Rops8g03305 8 71657242 71658760 Rops8g03305 8 71657242 71658760 ECH
Rops6g00979 6 23658424 23659313 Rops8g03305 8 71657242 71658760 ECH
Rops8g03305 8 71657242 71658760 Rops7g00684 7 9031762 9033547 ECH