Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03303 ATGAAGATTCCTTCTTCTTTTTCTTGTTGTTTCTCACCATCGGTCAAAGAACAACAAACCAAGCACGAGGAAGATAATGATGGAAGCTTTCGCCTATTCACTTATAGCGAATTGAGTTCTGCTACCCGTGGTTTTCATCCCTCGGAAAAGGTTGGAGAAGGAGGCTTTGGTTCTGTCTACAAGGGGCGGCTTATGGATGGCACTTTGGTGGCTGTGAAAGTTCTTTCGATTGAGCTTGAATCCTTGCGAGGAGAAAGGGAGTTCGTGGCAGAATTGACTACAATAGCAAATATCAAGCATCCAAATCTAGTCGTTCTTCGAGGGTGTTGTGTAGAAGGAGCAAACAGATATTTAGTCTATGATTACATGGAGAACAATAGCCTTCGTCACACTTTCTTAGGTTCAGAGCATAACAGGATGAGATTCAGCTGGGAAACACGGAGGGATATATCCATAGGTGTGGCCACCGGGCTTGCCTTTCTCCATGAGGAACTTAAACCTCGTATTGTTCATAGGGATATCAAGGCCAGCAATATCCTTCTTGATCGAAAGTTCACACCAAAAGTTTCAGACTTTGGTTTCGCTAAGCTACTAAGAGATGAAAAATCATACATCAGTACTCGGGTTGCAGGGACATTGGGTTATCTTGCTCCAGAGTATGCCAGTTCTGGACAGCTGACACGAAAATCAGATGTTTATAGCTTTGGAGTATTGCTCTTGGAAATTGTCAGTGGCCGAGAAGTGGTAAATTCTCGTCAACGTATGGAACGTTTCATAGTAGAGAAGGCATGGGCAGCTTATGAAGCTAATGATCTTATGAGAATGGTGGATCCCATGCTGAACACCAACTTTCCCGTGGAAGAAGCAAAACGATTCCTAATGGTAGGGCTACGTTGCGTGCAAGAAACGGCGAAGCTTCGGCCACGAATGCCAGAGGTTGTAGAGATGCTAACCAACAATATTGAAATGGAAGAAGTTAATATTTCAAAACCAGGATTGGTCAGTGATTTGAGGAGCACCAGAATGAGGCATTCATTAGAAGAAGAATCAAGTTCTATTGGAGCAACCTTTGCAAGCTCAATGTGGAGCACCACCCATCTTGCCCGTTAG 1110 0.4387 MKIPSSFSCCFSPSVKEQQTKHEEDNDGSFRLFTYSELSSATRGFHPSEKVGEGGFGSVYKGRLMDGTLVAVKVLSIELESLRGEREFVAELTTIANIKHPNLVVLRGCCVEGANRYLVYDYMENNSLRHTFLGSEHNRMRFSWETRRDISIGVATGLAFLHEELKPRIVHRDIKASNILLDRKFTPKVSDFGFAKLLRDEKSYISTRVAGTLGYLAPEYASSGQLTRKSDVYSFGVLLLEIVSGREVVNSRQRMERFIVEKAWAAYEANDLMRMVDPMLNTNFPVEEAKRFLMVGLRCVQETAKLRPRMPEVVEMLTNNIEMEEVNISKPGLVSDLRSTRMRHSLEEESSSIGATFASSMWSTTHLAR* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03303 369 SUPERFAMILY Protein kinase-like (PK-like) 27 341 IPR011009 -
Rops8g03303 369 FunFam Putative LRR receptor-like serine/threonine-protein kinase 123 329 - -
Rops8g03303 369 SMART serkin_6 45 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g03303 369 CDD STKc_IRAK 51 319 - -
Rops8g03303 369 Gene3D Phosphorylase Kinase; domain 1 7 122 - -
Rops8g03303 369 ProSiteProfiles Protein kinase domain profile. 45 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g03303 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Rops8g03303 369 FunFam Serine/threonine-protein kinase receptor 15 122 - -
Rops8g03303 369 Gene3D Transferase(Phosphotransferase) domain 1 123 332 - -
Rops8g03303 369 Pfam Protein kinase domain 46 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g03303 369 ProSitePatterns Protein kinases ATP-binding region signature. 51 73 IPR017441 GO:0005524
Rops8g03303 369 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 29 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03303 Rops-Chr8 71637375 71639704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03303 33 358 Receptor kinase-like Gene Family AT1G53430 47.720 5.93e-96 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Rops8g03303 Pkinase 2.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03303 - - gmx:100785251 550.821