Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03302 ATGGGCAATATCTCAAGCAACGGCGGCAACAACCGTCGCCGACTCAGTAACGGTTCAAGGCGGGGTCACCCGGCACCGCCTCCGCCGGTGACGCCACAACCCGAAATCGTGGCTAATCCATTTGTGTACCCTGGTGCTGCACCGTACCCGAACCCTCCTCCCCCCATGCATTACCCACAGTTCCATCATTACCCTGGTTACTATCCACCACCGTTGCCTCTGCCACATCACCATCATCGTCCACACATGGACCCAGATTGGATTTCCAGGTTTTATCCTTGTGGACCGGTCATGACTCCACCTACACCCTTTGTTGAGCATCAAAAAGCCGTTACCATAAGGAACGATGTTAATATCAAGAAGGAGACCCTTACCATTGAACCCGATGAGGATAACCCTGGATTCTTTCTTGTGTCTTTTACCTTTGACGCCACCGTTTCTGGGAGAATCACCATATTTTTCTTTGCAAAAGAAGAGGAAGGCTGCATCCTCACACCAATGAAGGAAAACCATCTTGCACCTGTGACTGTACAATTCCAGCAAGGTCTTGGCCAGAAGTTTAGACAACCAGCTGGAACTGGTATTGATTTTTCAATGTTTGAGGAGTCGGAGATATTGAAAGTGGGTGACATGAATGTCTACCCTCTAGCAGTGAGGGCAGATGCATCCCCTGGTAATCATGAGGTATCAAATGAAACTCCAACATCTGGTAGTAACACAAACTCTCAGATAACCCAAGCATTGTTTGAGAAGGAGAAAGGAGAATTCCGGGTGAAAGTTGTTAAGCAGATCTTGTGGGTGAATGGAAAGATGTATGAGCTGCAGGAGATATATGGAATTGGAAATTCAATGGAGAGTGGCTTGGACGAGAATGACCAAGGAAAAGAGTGTGTCATATGCTTGTCAGAGCCTCGTGACACAATTGTCCATCCCTGCCGACATATGTGCATGTGTAGCGGATGTGCAAAGGATCCGAGGTTCCAGACAAATAGATGCCCAATTTGCAGACAACCAGTTGAGAGGCTTTTGGAGATAAAGGTAGGGCCTGAGGAGTGA 1056 0.4792 MGNISSNGGNNRRRLSNGSRRGHPAPPPPVTPQPEIVANPFVYPGAAPYPNPPPPMHYPQFHHYPGYYPPPLPLPHHHHRPHMDPDWISRFYPCGPVMTPPTPFVEHQKAVTIRNDVNIKKETLTIEPDEDNPGFFLVSFTFDATVSGRITIFFFAKEEEGCILTPMKENHLAPVTVQFQQGLGQKFRQPAGTGIDFSMFEESEILKVGDMNVYPLAVRADASPGNHEVSNETPTSGSNTNSQITQALFEKEKGEFRVKVVKQILWVNGKMYELQEIYGIGNSMESGLDENDQGKECVICLSEPRDTIVHPCRHMCMCSGCAKDPRFQTNRCPICRQPVERLLEIKVGPEE* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03302 351 MobiDBLite consensus disorder prediction 1 37 - -
Rops8g03302 351 Pfam Zinc finger, C3HC4 type (RING finger) 295 341 - -
Rops8g03302 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 346 IPR013083 -
Rops8g03302 351 MobiDBLite consensus disorder prediction 1 15 - -
Rops8g03302 351 MobiDBLite consensus disorder prediction 226 242 - -
Rops8g03302 351 CDD mRING-HC-C3HC5_MGRN1-like 295 336 IPR045195 -
Rops8g03302 351 SMART ring_2 297 335 IPR001841 -
Rops8g03302 351 FunFam probable E3 ubiquitin-protein ligase LOG2 281 346 - -
Rops8g03302 351 ProSiteProfiles Zinc finger RING-type profile. 297 336 IPR001841 -
Rops8g03302 351 PANTHER MAHOGUNIN 1 346 IPR045194 GO:0061630
Rops8g03302 351 MobiDBLite consensus disorder prediction 223 242 - -
Rops8g03302 351 SUPERFAMILY RING/U-box 296 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03302 Rops-Chr8 71621138 71624494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03302 85 316 C3H Transcription Factor Family AT3G09770 61.603 1.03e-98 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03302 - - aprc:113862864 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03302 8 71621138 71624494 Rops8g03302 8 71621138 71624494 ECH
Rops8g03302 8 71621138 71624494 Rops6g01049 6 24808960 24814685 PCT