Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03298 ATGGCAACTGAAGCTCAAGGCTTTCCCAAGGATAGTGACCAAGACACTGATAATAGAGCTGATAACTCAATTCAAAAGGATGTAGAGTCATCTGAAATAACTGAAGAAGTCCCTAGTAGTAGTAGTAGACGACATGGGAGAAGGAAAAACCTGATCTTGGAGATACCCTCAAGAACACTGGAAGAAGCAAGAGAAGATTTTTTGAGAACAAACAAGCCTCCAACTCCACATCCCAGAAGACTGAATTTTTACCCCTGCATAAGCCCTCGTTTCTCCGGAATCAATCAGTTTCAAGGTCCCTCATCATCAAAAAGTAAATCAACTGTTAAAGCTCCTGTTCCCAAACTCAATTTCAAGTCTCAGAACATGAGTTCAGATATTGAAAAGGCTTCCACCCTATCACTTGAAGGTTCACCCCCAGAGCCACCAAAAAAGCCCATGATTTCAAGGACATTATCTTTTACAAAGACAAAGGGACAGCAATTACCAATACATCGTTCCCATTCAGTTCCTGCACTTAGCAAATATGGCAACACCTCTGTAGGTGGCATGTTTCGTATTGTTCCTACCACACCACGGTTGGCTGGGAGTAGTGCCACAACATCTATAAAACCTCCACCTGACGATACTGTTGAAAGTGAAGATGGAGAAGATATTCCTGAAGAAGAAGCTGTCTGCAGAATTTGTTTGATTGAATTGGGAGAAGGTGCTGATACCCTTAAAATGGAGTGCAGCTGCAAAGGTGAACTTGCACTGGCGCACCAAGAGTGTGCAGTTAAATGGTTTAGCATTAAAGGCAATAGAACATGTGATGTGTGCAATCAGGAAGTTCAGAATCTACCTGTCACTCTTCTAAGAGTTCCAGTTGACATGATAAGGATTAGAGATCAGCAATACAGGATTTGGCAAAATATTCCCATTCTTGTCATGATCCACATGCTGGCTTACTTTTGCTTTCTTGAGCAACTTCTTGTTTCAAGTATAGGATCTGGTGCCATTGCCATATCTCTCCCATTTTCTTGTATGCTGGGTCTTCTTGGAAGCATGACATCCACAACAATGGTGAGGAGAAAACATGTTTCACTTTATGCAATTGTCCAGTTTGTTATGGTGGTTCTCGCTGGACGTCTTTTCTACTCACTGCTTCATATGCAAGCTGTTCTATCTATCCTACTTGCTACATTTACAGGGTTTGGAGCTGTAATGTGTGGAGCTTCTATTCTTACTGAGTTTTTGAAGTGGAGGAGACGATGGCTTGCTCAGTTGAATCAACAGCATGGTTCCCAAGAGGTGGTACTTCCTGATCAATCACATTCATCTTCAACCACTGATCAAGCTCAGACTGATTCTCAACATCATGAGAATAATATGAGAGACTCTGCAGCGCGCACTGCAATTGTGGGGGAACAAAAAGGATTTTGTACGGCCACGTTTCTGACCCTACCAAGGCAGAATTCACCCCAAGCTCCATAA 1473 0.425 MATEAQGFPKDSDQDTDNRADNSIQKDVESSEITEEVPSSSSRRHGRRKNLILEIPSRTLEEAREDFLRTNKPPTPHPRRLNFYPCISPRFSGINQFQGPSSSKSKSTVKAPVPKLNFKSQNMSSDIEKASTLSLEGSPPEPPKKPMISRTLSFTKTKGQQLPIHRSHSVPALSKYGNTSVGGMFRIVPTTPRLAGSSATTSIKPPPDDTVESEDGEDIPEEEAVCRICLIELGEGADTLKMECSCKGELALAHQECAVKWFSIKGNRTCDVCNQEVQNLPVTLLRVPVDMIRIRDQQYRIWQNIPILVMIHMLAYFCFLEQLLVSSIGSGAIAISLPFSCMLGLLGSMTSTTMVRRKHVSLYAIVQFVMVVLAGRLFYSLLHMQAVLSILLATFTGFGAVMCGASILTEFLKWRRRWLAQLNQQHGSQEVVLPDQSHSSSTTDQAQTDSQHHENNMRDSAARTAIVGEQKGFCTATFLTLPRQNSPQAP* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03298 490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 210 281 IPR013083 -
Rops8g03298 490 MobiDBLite consensus disorder prediction 119 148 - -
Rops8g03298 490 Pfam RING-variant domain 226 273 IPR011016 GO:0008270
Rops8g03298 490 SUPERFAMILY RING/U-box 222 277 - -
Rops8g03298 490 CDD RING_CH-C4HC3_MARCH 226 274 - -
Rops8g03298 490 MobiDBLite consensus disorder prediction 430 450 - -
Rops8g03298 490 MobiDBLite consensus disorder prediction 10 73 - -
Rops8g03298 490 ProSiteProfiles Zinc finger RING-CH-type profile. 218 280 IPR011016 GO:0008270
Rops8g03298 490 PANTHER OS02G0165000 PROTEIN 20 157 - -
Rops8g03298 490 SMART ringv_2 225 274 IPR011016 GO:0008270
Rops8g03298 490 MobiDBLite consensus disorder prediction 430 457 - -
Rops8g03298 490 MobiDBLite consensus disorder prediction 1 80 - -
Rops8g03298 490 MobiDBLite consensus disorder prediction 194 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03298 Rops-Chr8 71547650 71553193 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03298 159 280 C3H Transcription Factor Family AT2G37950 30.400 8.61e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03298 - - gmx:100789854 563.918