Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03294 ATGCTTAATAATCTCATCGGTTTCTCGTTGTTAACCATGGATTCGGTGGCATACAGAGGATTACTTTACTCTTTCTTCATACTCAATTTTGTTTTGGTCTGCCAACTCATTCTTCTTCAACCTCTCGTTTCTGCTTCAGATGGAAAACCTGAAAATGCTGCTGAGTTGTTTGAGAGGGCATCACAAAGTATAAAGGTTAAACATTATACTGAGGCACTTGATGATCTAAATGCTGCAATAGAAGCAGATCCAACCCTTTCAGAAGCATACCTTTTCCGTGCATCGGTTCTTCGTCGTTTATGCAGATATGAGCAATCTGAGCGGAGCTACAAAAAGTTTCTGGAGTTAAAACCTGGAGATTCAGCTGCAGAAAAGGAGCTCTCTCAGCTGTTGCAGGCCCAAAGTGCCTTAGAAACAGCTCAGTCCCTCTATGATTCGGGAAACTTCACAAAATCTTTGGAATATATTGATAAAGTTGTTCTTGTTTTTTCTCCAGCTTGCACTAAGGCTAAGCTTCTTAAAGTGAGGTTGTTGATAGCTGATAAAGAGTATGAGGGTGCCATTGCTGAGTCTGGCTTTATTCTCAAGGAAGATGAAAACAATTTAGAGGCATTGTTGTTACGTGGTCGTGCATATTACTATTTAGCTGATCATGATATTGCCACGAGGCATTTCCAGAAAGGTCTCCGTCTAGATCCAGAGCACAGTGAACTGAAAAAAGCATATTTTAAGTTGAAAAATCTACTCAAAAAGAGTAAAAGTGCTGAAGATAATGCAAGTAAGGGTAAGCTACGGGTGTCAGTGGAGGAATTCAAAAGTGCACTTGCTGTTGACCCTGACCATCTTGCACACAATGTGAACCTTCATCTTGGCTTATGTAAAGTGTTAGTCAAGCTTGGTAGAGGAAAAGATGCCTTGAACAGTTGTAGTGAAGCTCTTAAGATCAATGAGGAGCTTATTGAAGCTCTTGTTCAGAGGGGAGAAGCTAAACTCTTGACAGAGGATTGGGAGGGAGCTGTGGAGGATCTGAAATCAGCTGCCCAAAAATCTTCTCAGGATATGAATATCCGTGAAGCATTAATGAGGGCCGAAAAGGCTTTAAAGATGAGCAAACGCAAGGATTACTACAAAATTTTGGGAATCTCAAAAACTGCTTCTGCTGCTGATATAAAACGTGCCTACAAGAAACTTGCCTTACAATGGCACCCAGATAAGAATGTTGAGAATAGGGAAGAAGCAGAGGCTAAATTCCGAGAAGTTGCTGCTGCTTATGAGGTTCTAAGTGATGAAGACAAACGCGTAAGATATGACAGAGGGGAGGACCTCGAAGACATGGGAATGGGAGGTGGTGGTGGTGGTTTCAACCCCTTTGGTGGTGGGGGGCAGCAATATACCTTTACTTTTGAGGGTGGCTTCCCGGGTGGAGGCTTTCCCGGTGGTGGATATGGAGGCGGCTTTCCGGGTGGCTATGAATTTCATTTTTGA 1485 0.4263 MLNNLIGFSLLTMDSVAYRGLLYSFFILNFVLVCQLILLQPLVSASDGKPENAAELFERASQSIKVKHYTEALDDLNAAIEADPTLSEAYLFRASVLRRLCRYEQSERSYKKFLELKPGDSAAEKELSQLLQAQSALETAQSLYDSGNFTKSLEYIDKVVLVFSPACTKAKLLKVRLLIADKEYEGAIAESGFILKEDENNLEALLLRGRAYYYLADHDIATRHFQKGLRLDPEHSELKKAYFKLKNLLKKSKSAEDNASKGKLRVSVEEFKSALAVDPDHLAHNVNLHLGLCKVLVKLGRGKDALNSCSEALKINEELIEALVQRGEAKLLTEDWEGAVEDLKSAAQKSSQDMNIREALMRAEKALKMSKRKDYYKILGISKTASAADIKRAYKKLALQWHPDKNVENREEAEAKFREVAAAYEVLSDEDKRVRYDRGEDLEDMGMGGGGGGFNPFGGGGQQYTFTFEGGFPGGGFPGGGYGGGFPGGYEFHF* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03294 494 CDD DnaJ 374 429 IPR001623 -
Rops8g03294 494 PRINTS DnaJ domain signature 376 394 IPR001623 -
Rops8g03294 494 PRINTS DnaJ domain signature 412 432 IPR001623 -
Rops8g03294 494 PRINTS DnaJ domain signature 394 409 IPR001623 -
Rops8g03294 494 PRINTS DnaJ domain signature 432 451 IPR001623 -
Rops8g03294 494 SMART tpr_5 320 353 IPR019734 GO:0005515
Rops8g03294 494 SMART tpr_5 53 86 IPR019734 GO:0005515
Rops8g03294 494 SMART tpr_5 202 235 IPR019734 GO:0005515
Rops8g03294 494 SMART tpr_5 286 319 IPR019734 GO:0005515
Rops8g03294 494 SMART tpr_5 87 120 IPR019734 GO:0005515
Rops8g03294 494 FunFam DnaJ domain containing protein 40 371 - -
Rops8g03294 494 FunFam DnaJ subfamily C member 7 372 480 - -
Rops8g03294 494 ProSitePatterns Nt-dnaJ domain signature. 417 436 IPR018253 -
Rops8g03294 494 ProSiteProfiles dnaJ domain profile. 374 440 IPR001623 -
Rops8g03294 494 Coils Coil 410 430 - -
Rops8g03294 494 Gene3D Tetratricopeptide repeat domain 42 371 IPR011990 GO:0005515
Rops8g03294 494 Pfam Tetratricopeptide repeat 67 121 - -
Rops8g03294 494 Pfam Tetratricopeptide repeat 203 235 IPR013105 -
Rops8g03294 494 ProSiteProfiles TPR repeat profile. 87 120 IPR019734 GO:0005515
Rops8g03294 494 Gene3D DnaJ domain 372 479 IPR036869 -
Rops8g03294 494 Pfam DnaJ domain 374 437 IPR001623 -
Rops8g03294 494 SUPERFAMILY Chaperone J-domain 367 476 IPR036869 -
Rops8g03294 494 SMART dnaj_3 373 432 IPR001623 -
Rops8g03294 494 ProSiteProfiles TPR repeat profile. 202 235 IPR019734 GO:0005515
Rops8g03294 494 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 25 494 IPR044620 -
Rops8g03294 494 SUPERFAMILY TPR-like 49 368 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03294 Rops-Chr8 71490644 71495520 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03294 370 437 C2H2 Transcription Factor Family AT1G74250 45.833 6.96e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03294 K09523 - gmx:100781496 778.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03294 8 71490644 71495520 Rops8g03294 8 71490644 71495520 ECH