Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03293 ATGCAAATGATGCCCAGTGACCGCTTTTCACCATCCACTTCCATCGGAGGGATTCCAAAAGAGCAAAATACAAACCCTAACCCTAATCCCCCTCCAACCACCAAGAAGAAGAGAAATCTACCAGGAACACCAGATCCAGATGCCGAGGTCATTGCTATTTCGCCAAAGACTCTCATGGCGAGAAACCGTTTCATCTGTGAAATATGCAACAAAGGGTTCCAGAGGGATCAGAACCTTCAGCTTCACAGAAGGGGTCACAACCTTCCATGGAAGCTGAAACAAAGGTCCAATAAAGAGGCAAGAAAGAAGGTGTACATCTGCCCGGAGAAGACCTGCGTCCACCACGACGCGGCGAGGGCACTCGGCGACCTCACCGGAATAAAGAAGCATTACAGCAGAAAACACGGTGAGAAGAAGTGGAAGTGTGACAAGTGTTCCAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACACTAAAACTTGTGGTACTAGAGAATATAAGTGCGATTGTGGCACCCTCTTCTCTAGGAAGGACAGCTTTATTACACACAGAGCTTTCTGCGATGCCTTAGCTGAAGAGAGTGCAAGACTCACCTCAGTTGCAACAAGTCTAAATTTTAAGAACGAAGAAGCAAGTGTGATGAACACGCAGTCCTTTGGTTCACATGGGTTTCGTGTGGATTTCAATGGAATGGAGCAAAGGGAAAACTTGTCACTGTGGTTGAACCAGGGAAATCCTCAGATTGATGTGTCATCAGGTTTGCCTGAGGTTATGCAAATGGCACAAGCTAATGCCTTAACGGGTTCTTCTTCAGTGTTGTCTAATTTTGGAATGTCTGCTTCCAATTCATGTAATGGAAACATTTCCTTAATGGGGAAAAAGGGAGAAGGTGGAACTGTAGATTCAGCTTCTCCAATGTCAGCCACTGCCCTTCTTCAGAAGGCAGCTCAGATGGGTTCAACAAGAAGCGAAAACCCTTCCATTTTCAGTGGCAGTTTTGGAGTAATGACCTCATCTTCAACTCAAACTACTACTCCTCTCAATAGCAATGTTAACCAAAACTTTCAGAATATGGAGAATTTTAATCCAACTAGCAGTGCAGCTATGCTGGGTAGTTCTACTAGCTTTGCCTCATTTACACATTCATCAAACTCACACTGTTTTGATCAATTTGTGATGCAAACCAATATGAAACCAAGTGACAAGTTGCAATTGAAGCTCTATCCCGGTTCAAATACAGCTGAACATAACTTGACAAGAGATTTTCTTGGCGTGAGTGGAGGAGGAGCTGACCATCCATTCCTTCCCCAAGAGCTTGCAAAGTTTGCTTCCATTGGGTCATCCATGAGTTTTAACCAATTCACTGCCGGCCATCAATGA 1383 0.444 MQMMPSDRFSPSTSIGGIPKEQNTNPNPNPPPTTKKKRNLPGTPDPDAEVIAISPKTLMARNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEARKKVYICPEKTCVHHDAARALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVATSLNFKNEEASVMNTQSFGSHGFRVDFNGMEQRENLSLWLNQGNPQIDVSSGLPEVMQMAQANALTGSSSVLSNFGMSASNSCNGNISLMGKKGEGGTVDSASPMSATALLQKAAQMGSTRSENPSIFSGSFGVMTSSSTQTTTPLNSNVNQNFQNMENFNPTSSAAMLGSSTSFASFTHSSNSHCFDQFVMQTNMKPSDKLQLKLYPGSNTAEHNLTRDFLGVSGGGADHPFLPQELAKFASIGSSMSFNQFTAGHQ* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03293 460 FunFam protein indeterminate-domain 12-like 43 111 - -
Rops8g03293 460 SMART c2h2final6 64 86 IPR013087 -
Rops8g03293 460 SMART c2h2final6 140 160 IPR013087 -
Rops8g03293 460 SMART c2h2final6 105 135 IPR013087 -
Rops8g03293 460 MobiDBLite consensus disorder prediction 1 47 - -
Rops8g03293 460 Gene3D Classic Zinc Finger 43 117 - -
Rops8g03293 460 Pfam Zinc-finger double-stranded RNA-binding 64 86 IPR022755 -
Rops8g03293 460 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Rops8g03293 460 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Rops8g03293 460 MobiDBLite consensus disorder prediction 1 23 - -
Rops8g03293 460 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Rops8g03293 460 Gene3D Classic Zinc Finger 118 197 - -
Rops8g03293 460 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Rops8g03293 460 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 438 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03293 Rops-Chr8 71472263 71474693 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03293 305 447 IDZ Gene Family AT5G03150 40.994 3.91e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops8g03293 zf-C2H2_jaz 6.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03293 K25870 - gmx:100789331 650.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03293 8 71472263 71474693 Rops8g03293 8 71472263 71474693 ECH
Rops8g03293 8 71472263 71474693 Rops6g01054 6 24880954 24883469 PCT