Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03292 ATGGACAATGATCCTAATTCAGAAATCCAACTCCCTCCTGGTTTTAGATTCCACCCTTCTGATGAGGAACTCATTGTTCACTATCTGAGAAACAAAGTGTCTTCATCTCCCCTTCCTGCTTCATTCATAGCAGAAATAGATCTTTACAAGTATAATCCATGGGAGCTACCAAGCAAATCTTTGTTTGGGGAGGATGAATGGTATTTCTTTACTCCTAGGGACAGGAAATATCCCAATGGAGTGAGGCCTAATAGAGCAGCTGGTTCAGGTTATTGGAAGGCTACTGGGACAGATAAACCTATTCTTACTTCATGTGGGATGAAGAGCATTGGAGTGAAGAAGGCCCTTGTGTTCTACAAGGGACGTCCACCAAAAGGATCTAAAACTGATTGGATCATGCATGAGTATAGGTTGCATGATTCAATGATCTCTAATTCCAAGCAAAGAGGGTCTATGAGACTGGATGAATGGGTGCTATGCCGGGTTCGACAAAAAATCAGCAGCCCAAGAAGCATTTGGGAAGATTATAATGAACTTAATTGGAATGAACCAACCAGCCACGTTCAACAAATGAATGAGAACTCTAATCCTGAACCAGTCAAAAAACCTGCGCACAATGAATATCCATTGTTACCTTATATTTTGGCTTCTAAGAGTGCTCTGCCTAATTCCATTGGTATGGCCTCAAGCTCAGGCTTTCGTAGTAATGATGATATGAAAGCATATGCATCGTTGCATGAAGACAACTTAGACATAGGAGCGCAGTTCTTAGCATCTGCAACCGAGGGCTTGTTTGATCTGCCTAAGAGAAAAGCCATTGAAGAAAATGAGTTGGACTTCTATGCTCCTCTCAATAAAAAACTAAGCAAAGAACTTGATGATGGGAAGCAAAGGCTTGAAGGGTATAATTTCAACAACTTTGACCAGTGGACTTCGATCATACAACCTCAAGAGCTTAATAGCTCAGCCTTTATGGGATATACATGA 987 0.4124 MDNDPNSEIQLPPGFRFHPSDEELIVHYLRNKVSSSPLPASFIAEIDLYKYNPWELPSKSLFGEDEWYFFTPRDRKYPNGVRPNRAAGSGYWKATGTDKPILTSCGMKSIGVKKALVFYKGRPPKGSKTDWIMHEYRLHDSMISNSKQRGSMRLDEWVLCRVRQKISSPRSIWEDYNELNWNEPTSHVQQMNENSNPEPVKKPAHNEYPLLPYILASKSALPNSIGMASSSGFRSNDDMKAYASLHEDNLDIGAQFLASATEGLFDLPKRKAIEENELDFYAPLNKKLSKELDDGKQRLEGYNFNNFDQWTSIIQPQELNSSAFMGYT* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03292 328 Gene3D NAC domain 20 168 IPR036093 GO:0003677|GO:0006355
Rops8g03292 328 ProSiteProfiles NAC domain profile. 11 165 IPR003441 GO:0003677|GO:0006355
Rops8g03292 328 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 227 - -
Rops8g03292 328 FunFam NAC transcription factor 20 168 - -
Rops8g03292 328 SUPERFAMILY NAC domain 8 165 IPR036093 GO:0003677|GO:0006355
Rops8g03292 328 Pfam No apical meristem (NAM) protein 12 138 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03292 Rops-Chr8 71452368 71453561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03292 6 165 NAC Transcription Factor Family AT1G69490 71.250 3.48e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops8g03292 NAM 7.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03292 - - gmx:100788799 548.895