Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03291 ATGTCTCCGGTGACGACGCCTTCGCCAAACTCTACGCATCCGTCGACGCAGAAAGCAGAAATCACTTCCAAGGAGAAATCTAAGGCTTCTACCGTAGCGATCAATGCCGAGATTCGTCGTACCAAGGCTAGATTGTTGGAATGGAGGAGTTCTGATTATTTTGAAAAACTGTTGACTTATTCTATTTGGTGTGTAAAGGGGCTATCATCACTAGAATTTGCTGCCCGTAATGATTTGGTTCTTGCATTGCCAGAGAGGATCCAAGCAATCCCAGATGGGACCCCTGCTCCACCCAAACAAACTGGAGTCACAGATGGGCGATTTGATGATGAATACTTCCAGCAAACTGAACAATCAAGTAGATTCAGGCAGGAGTATGAAATGCGTAAAATGAAACAGCATCAAGGTTTGGATTTGATCGCAGAAGGATTGGATACTTTGAAAAACATGGCACACGATATGAATGAGGAACTGGATCGACAAGTTCCACTGATGGATGAGATTGATACTAAGGTGGACAAAGCATCCTCAGACCTTAAGAATACCAATGTTAGAGTAGACTTAAAGACACTGTGA 576 0.4358 MSPVTTPSPNSTHPSTQKAEITSKEKSKASTVAINAEIRRTKARLLEWRSSDYFEKLLTYSIWCVKGLSSLEFAARNDLVLALPERIQAIPDGTPAPPKQTGVTDGRFDDEYFQQTEQSSRFRQEYEMRKMKQHQGLDLIAEGLDTLKNMAHDMNEELDRQVPLMDEIDTKVDKASSDLKNTNVRVDLKTL* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03291 191 PANTHER SYNTAXIN 95 183 IPR045242 -
Rops8g03291 191 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 127 189 IPR000727 -
Rops8g03291 191 Gene3D - 127 188 - -
Rops8g03291 191 MobiDBLite consensus disorder prediction 1 27 - -
Rops8g03291 191 FunFam Putative syntaxin-71-like 127 189 - -
Rops8g03291 191 SMART tSNARE_6 122 191 IPR000727 -
Rops8g03291 191 MobiDBLite consensus disorder prediction 1 18 - -
Rops8g03291 191 ProSitePatterns Syntaxin / epimorphin family signature. 133 172 IPR006012 GO:0005484|GO:0006886|GO:0016020
Rops8g03291 191 SUPERFAMILY SNARE fusion complex 122 187 - -
Rops8g03291 191 CDD SNARE_Qc 132 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03291 Rops-Chr8 71447282 71449228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03291 17 186 SNARE and Associated Proteins AT3G09740 63.243 5.35e-77 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03291 K08506 - gmx:100804155 254.603