Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03290 ATGGCACAACAGCGTTTTCCCAACAAGAAAGGACTTATTAGCATGATGACATGCCGCAGTTATGGAGTGTTAATGTGTCGTTTAGATCATGGTCATCCATCTTCTGGGATTGGATGCTTGGTTGGCATGAAATGGCCTAGCAATTATGCTGACGATATTGTGGCAATAGATTTGTCACACCCAATGTTTAGTGATGCAAGATGTTGACTAGAAGGTGCTCTTTCTATATCAGTGGATAGAGGCGTGAGTAAATGGCTTCAAATTGAGAGTTATTTGCATATCTCACTCAGTTACGCTCTCTATTTTGACTCCTCGGGATTGCTAGTGACAGTTATGGGGCATAGACACTTGTATAACACATCTCCATTGTTTGAGGGTGAGGCTGACCAGAATTGGAATCATATGCATACTGATCAACATTATGTAAACCTTGGTAGGACTAGTACTTCGGAGAATGGTCCTTTTATTTATCCAGTGGAAAATGTGTCTATGGATAGCATCTCTTTTCCCTCTCATTGGAACTCCACCACAAGGTCAAACGGATATGCGTCCTCTAGTCTCAACATTGAAGTACCTCCTCATCAATCAGATGCATCAGGCACTTCTAATGATCATTTTATGCATTCATCTAGTGCTGGAGCTTTCTTTGCTGCGTCTGAAAATTATGTACACCAGCCTTCTTCTTCCAATTATGACAGACAAGCATTTCATGTTGACAGTGGTTTTATTGATCTTACAATGGGAAGTGGACGAGGACCTCACAAGCGAAAGAGCCCTGGAATTCCTTCAGTTTATGAGAGAGGCAGTTCAAGCAGATTTTTCAATGCTGGGAGTTCAACTGATCTTCCCATATCTTCAGAATCACGGCCAGAGAAGCCAAATATGGATTCTCAATATATGCCCTGGGATCATGTTGCTATGACACCATCATTTAGAGGTGCTGGCCTCTCAATAAAGGGTGAGAGTTCTATAAGGAATGTTAGGAGCCGTTCTGCACTTGATTTGGAATCCAACCTTGCTAGGACCCATTTATCAAGTGGTCATCCACACAACTCCTACTCTTCTGTCCCACCAGTTGACCATTCTAGCATGATGGATCTTTCTGGTCAGATTTCTACCTCTTTGACAAGGGATTGGAGCCAAATGAACATATCTCCTGCTAATGGAAGGGTATCATTGCCAGACACTAATGCTTTTGGTCTTGAGACAAGTCACTTCCTTGTTGGAAGTGGTGCTACTGCCAGTAATGCTTCTGTAGATGTGGGGGGCTTCCATCATGAATTTGGTACAAGCAGAAATCCTATTGCTCCTCAAAGTTTTCATAATTCGACTCAGACTGCTAGGGGAATTCGAAGTAACTATTCTCAGAGACCCACTCCAACTTTTAGGGCTTCATCAAGCTTGCGCTTGGGACATATGGCACCTTCAGATGATGGATTGCCTATGGTAGCTGAAAGTTACTCTTCTAGACATCCAAGGCCGTCGACCACCATCGGCTGGCGAAATGGTGAGAGAAATGGGAGGTCAAGAATTTCTAGTGAAAGATATCGATCATTGGCTGATGAGGCTGGTCTCCATGATCGATTTTCCTCTGAGGGCTTCATGATCGTTGAGCGCGCTTCACTGTATGGTTCTAGGAACATGATTGATCAGCACAGAGACATGAGGATGGACATAGATAGCATGAGCTATGAGGAACTACTTGCACTTGGTGAGAGGATTGGTCATGTGAACACAGGATTGTCTGAGGATTTGCTTTCCAAGTGTTTGACAGAAACAATATATTGTTCATCTGAGCAAAGTCAAGATGAAGGAACCTGTGTAGTCTGTCTGGAAGAGTACAAGAACATGGATGATGTTGGGACACTTAATACTTGTGGACATGACTACCATGTGAGCTGCATCAAAAAGTGGTTATCTATGAAGAAATTATGTCCTATCTGCAAAGCTTCTGCTTTGCCTGAGGATTAG 1971 0.4302 MAQQRFPNKKGLISMMTCRSYGVLMCRLDHGHPSSGIGCLVGMKWPSNYADDIVAIDLSHPMFSDARC*LEGALSISVDRGVSKWLQIESYLHISLSYALYFDSSGLLVTVMGHRHLYNTSPLFEGEADQNWNHMHTDQHYVNLGRTSTSENGPFIYPVENVSMDSISFPSHWNSTTRSNGYASSSLNIEVPPHQSDASGTSNDHFMHSSSAGAFFAASENYVHQPSSSNYDRQAFHVDSGFIDLTMGSGRGPHKRKSPGIPSVYERGSSSRFFNAGSSTDLPISSESRPEKPNMDSQYMPWDHVAMTPSFRGAGLSIKGESSIRNVRSRSALDLESNLARTHLSSGHPHNSYSSVPPVDHSSMMDLSGQISTSLTRDWSQMNISPANGRVSLPDTNAFGLETSHFLVGSGATASNASVDVGGFHHEFGTSRNPIAPQSFHNSTQTARGIRSNYSQRPTPTFRASSSLRLGHMAPSDDGLPMVAESYSSRHPRPSTTIGWRNGERNGRSRISSERYRSLADEAGLHDRFSSEGFMIVERASLYGSRNMIDQHRDMRMDIDSMSYEELLALGERIGHVNTGLSEDLLSKCLTETIYCSSEQSQDEGTCVVCLEEYKNMDDVGTLNTCGHDYHVSCIKKWLSMKKLCPICKASALPED* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03290 655 MobiDBLite consensus disorder prediction 263 292 - -
Rops8g03290 655 MobiDBLite consensus disorder prediction 246 293 - -
Rops8g03290 655 MobiDBLite consensus disorder prediction 488 502 - -
Rops8g03290 655 SMART ring_2 606 647 IPR001841 -
Rops8g03290 655 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 571 652 IPR013083 -
Rops8g03290 655 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 220 652 IPR045191 GO:0061630
Rops8g03290 655 ProSiteProfiles Zinc finger RING-type profile. 606 648 IPR001841 -
Rops8g03290 655 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 571 652 - -
Rops8g03290 655 MobiDBLite consensus disorder prediction 485 505 - -
Rops8g03290 655 Pfam Ring finger domain 605 648 IPR001841 -
Rops8g03290 655 SUPERFAMILY RING/U-box 596 651 - -
Rops8g03290 655 CDD RING-H2_RNF24-like 604 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03290 Rops-Chr8 71431676 71442545 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03290 111 654 C3H Transcription Factor Family AT2G37150 42.831 5.62e-117 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03290 - - gmx:100803627 967.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03290 8 71431676 71442545 Rops8g03290 8 71431676 71442545 ECH