Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03288 ATGGCAACGTCGACTTTGCATGATGGCATGCACCTGGGAGTAGTCACGTCCATTAATATGGACTTGAGTGCAGGCACGTTGGGGTCACCGCCAGTTATCGACGCTAGCAATTTGGAACGGCTGCATGTGGCTGGGAAAGACAGGACGTCAATGGTCGATGGGCATGAAATGGAGTTTCACACATCACATGGATTTCATGCGTTGAAATCTCTGCTGGGTGTATCTGGAACCTTCTTCTCCAAAAGCATACTAACTGCAAACTTAGGATTCCATTCGCCATTCGTTTCAGCAGCCATGGCCGATGATGACTTTGACTTTGCCGATAAAGTTCCTCCTTCCTTCGATCGCGTGGGAAATGTTGTTAAGGATTCTGGATCCCAAGGGCTCAACCCAGGCTTAATTGTTCTCCTGGTTATAGGTGGATTGCTATTGACATTCCTCATTGGAAATTATGTGCTCTACACGTATGCACAAAAGACCCTCCCTCCTAGAAAAAAGAAGCCAATCTCAAAAAAGAAGATGAAGAAGGAGCGACTGAAGCAGGGCATCTCTGCACCTGGAGAGTAG 567 0.4727 MATSTLHDGMHLGVVTSINMDLSAGTLGSPPVIDASNLERLHVAGKDRTSMVDGHEMEFHTSHGFHALKSLLGVSGTFFSKSILTANLGFHSPFVSAAMADDDFDFADKVPPSFDRVGNVVKDSGSQGLNPGLIVLLVIGGLLLTFLIGNYVLYTYAQKTLPPRKKKPISKKKMKKERLKQGISAPGE* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03288 188 PANTHER DNA-BINDING PROTEIN S1FA2 102 188 IPR006779 GO:0003677|GO:0005634|GO:0006355
Rops8g03288 188 MobiDBLite consensus disorder prediction 164 178 - -
Rops8g03288 188 MobiDBLite consensus disorder prediction 164 188 - -
Rops8g03288 188 Pfam DNA binding protein S1FA 125 188 IPR006779 GO:0003677|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03288 Rops-Chr8 71404879 71411379 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF S1Fa-like Rops8g03288 S1FA 1.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03288 - - gmx:100499820 150.214