Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops8g03282 | ATGGCCAACGACTCGTCGTTTTTGTTCGCCGGCATTCGTTTCGATAGAAAGAAATTCGGCAACGACATCGCCAGGTTCCAGAAAAAAGATAGCGATAACAATTCGGTGAAGATTTTTAACTCGGCTGAAGATGAAAACGAGAAAACAATAGAACCTGTTGAACAGAGAGCACATTTAACGAAGAAGAGGAAGCGCAAGGGATCCTCTACGGAAGAAACGGTTGAAGGATTCACTGTGTTCAGAAATTCAACATCCGCGGATCAATCAAAGTCCAATGATGAAGTCCGAGAAGATGATGAGTCAATTCGGCTGAAGAAAGAACAAAATAAGCAACTTGAGCGTGATGCTATCTTCAGGAAGAAGCATAACATTCACGTCTCTGGTTATAACGTGCCATCTCCTCTTCAAAACTTCGAAGAGTTGAGATCGAGATATAAATGCCAGTCATATATATTGCGCAATCTGGCAGAACTCGGATTCAAAGAACCAACACCAATTCAACGCCAGGCTATTCCAGTACTTTTACATGGTCGTGAATGCTTTGCTTGTGCCCCAACTGGCTCTGGAAAAACCTTTGCATTTGTGTGTCCCATGCTTATGAAGCTTAAGGGTCCAGAAAAAGGTGGCATTCGAGCGGTTATCCTTTGTCATACTCGTGAATTGACTGCTCAGACGTATCGAGAGTGCAAAAAGCTTGCTAAAGGGAAAAATTTTCATATAAAGTTAATGACTAAACAGCTTGTAAGGAATGCTGATTTTTCGAAGTTTCCATGTGACATACTTATATCCACACCACTTCGATTACGCTTTGCTATCCGAAGGAAAAAGATTGATCTCAGCAGAGTTGAATATCTTGTCTTGGATGAATCTGATAAGCTATTTGAGCCGGAATTGTTCAAGCAAATTGATTCTGTTATCAAAGCATGCTCAAATCCCTCAATAATACGCTCACTGTTCAGTGCTACATTACCTGATTTTGTTGAAGATCGAGCTCGAGAACTCATGCATGATGCTGTTCGGGTGATTGTTGGCAGGAAGAATATGGCTTCTGAAACAATAAAGCAAAAGTTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTCTGGCAATTCGTCAAAGCTTTGCAGAGAGTCTAAATCCTCCAGTATTGGTCTTTGTCCAAAGCAAGGAGCGAGCCAAGGAGCTGTATGGGGAACTTAAATTTGACAACATTAGAGTTGATGTCATCCATTCTGATTTGTCTCAAGAAGAGCGAGAAAATGCTGTTGATAACTTCAGAGCTGGAAAAACATGGGTTTTGATTGCTACTGATGTAGTTGCTCGGGGCATGGATTTCAAAGGTGTGAACTGTGTGATCAATTATGATTTCCCAGATTCTGCTGCTGCATATGTCCACAGAATTGGTCGTTCTGGCAGAGCAGGGAGGACTGGAGAAGCAATTACATTTTACACAGAGGAAGACATTCCGTTCCTGCGGAATGTAGCTAATCTTATGGCAGCATCAGGCTGTGAGGTTCCATCCTGGCTAATGGATTTGCGCAAAAAGAAGTGGAAGAAACACCGGCCCAAAAGAGAGACAATTTCAACCAAACCAGATCTGCCAGGAAACAGTATTAGGTAA | 1620 | 0.4191 | MANDSSFLFAGIRFDRKKFGNDIARFQKKDSDNNSVKIFNSAEDENEKTIEPVEQRAHLTKKRKRKGSSTEETVEGFTVFRNSTSADQSKSNDEVREDDESIRLKKEQNKQLERDAIFRKKHNIHVSGYNVPSPLQNFEELRSRYKCQSYILRNLAELGFKEPTPIQRQAIPVLLHGRECFACAPTGSGKTFAFVCPMLMKLKGPEKGGIRAVILCHTRELTAQTYRECKKLAKGKNFHIKLMTKQLVRNADFSKFPCDILISTPLRLRFAIRRKKIDLSRVEYLVLDESDKLFEPELFKQIDSVIKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLVFVQSKERAKELYGELKFDNIRVDVIHSDLSQEERENAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSAAAYVHRIGRSGRAGRTGEAITFYTEEDIPFLRNVANLMAASGCEVPSWLMDLRKKKWKKHRPKRETISTKPDLPGNSIR* | 540 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops8g03282 | 539 | MobiDBLite | consensus disorder prediction | 30 | 101 | - | - | |
Rops8g03282 | 539 | MobiDBLite | consensus disorder prediction | 520 | 539 | - | - | |
Rops8g03282 | 539 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 171 | 341 | IPR014001 | - | |
Rops8g03282 | 539 | Pfam | Helicase conserved C-terminal domain | 371 | 474 | IPR001650 | - | |
Rops8g03282 | 539 | CDD | SF2_C_DEAD | 353 | 483 | - | - | |
Rops8g03282 | 539 | CDD | DEADc_DDX52 | 151 | 344 | IPR044764 | GO:0003724|GO:0005524|GO:0030490 | |
Rops8g03282 | 539 | SMART | ultradead3 | 159 | 356 | IPR014001 | - | |
Rops8g03282 | 539 | Gene3D | - | 79 | 340 | IPR027417 | - | |
Rops8g03282 | 539 | Coils | Coil | 95 | 115 | - | - | |
Rops8g03282 | 539 | PANTHER | ATP-DEPENDENT RNA HELICASE RHLE-RELATED | 85 | 521 | - | - | |
Rops8g03282 | 539 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 171 | 486 | IPR027417 | - | |
Rops8g03282 | 539 | MobiDBLite | consensus disorder prediction | 72 | 89 | - | - | |
Rops8g03282 | 539 | Pfam | DEAD/DEAH box helicase | 164 | 328 | IPR011545 | GO:0003676|GO:0005524 | |
Rops8g03282 | 539 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 352 | 513 | IPR001650 | - | |
Rops8g03282 | 539 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 140 | 168 | IPR014014 | GO:0003724 | |
Rops8g03282 | 539 | SMART | helicmild6 | 393 | 474 | IPR001650 | - | |
Rops8g03282 | 539 | Gene3D | - | 341 | 518 | IPR027417 | - | |
Rops8g03282 | 539 | MobiDBLite | consensus disorder prediction | 41 | 58 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops8g03282 | Rops-Chr8 | 71358900 | 71363328 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops8g03282 | 151 | 512 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 31.868 | 1.58e-54 | 187 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops8g03282 | K14779 | - | gmx:100800969 | 922.539 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops8g03282 | 8 | 71358900 | 71363328 | Rops8g03282 | 8 | 71358900 | 71363328 | ECH |