Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03282 ATGGCCAACGACTCGTCGTTTTTGTTCGCCGGCATTCGTTTCGATAGAAAGAAATTCGGCAACGACATCGCCAGGTTCCAGAAAAAAGATAGCGATAACAATTCGGTGAAGATTTTTAACTCGGCTGAAGATGAAAACGAGAAAACAATAGAACCTGTTGAACAGAGAGCACATTTAACGAAGAAGAGGAAGCGCAAGGGATCCTCTACGGAAGAAACGGTTGAAGGATTCACTGTGTTCAGAAATTCAACATCCGCGGATCAATCAAAGTCCAATGATGAAGTCCGAGAAGATGATGAGTCAATTCGGCTGAAGAAAGAACAAAATAAGCAACTTGAGCGTGATGCTATCTTCAGGAAGAAGCATAACATTCACGTCTCTGGTTATAACGTGCCATCTCCTCTTCAAAACTTCGAAGAGTTGAGATCGAGATATAAATGCCAGTCATATATATTGCGCAATCTGGCAGAACTCGGATTCAAAGAACCAACACCAATTCAACGCCAGGCTATTCCAGTACTTTTACATGGTCGTGAATGCTTTGCTTGTGCCCCAACTGGCTCTGGAAAAACCTTTGCATTTGTGTGTCCCATGCTTATGAAGCTTAAGGGTCCAGAAAAAGGTGGCATTCGAGCGGTTATCCTTTGTCATACTCGTGAATTGACTGCTCAGACGTATCGAGAGTGCAAAAAGCTTGCTAAAGGGAAAAATTTTCATATAAAGTTAATGACTAAACAGCTTGTAAGGAATGCTGATTTTTCGAAGTTTCCATGTGACATACTTATATCCACACCACTTCGATTACGCTTTGCTATCCGAAGGAAAAAGATTGATCTCAGCAGAGTTGAATATCTTGTCTTGGATGAATCTGATAAGCTATTTGAGCCGGAATTGTTCAAGCAAATTGATTCTGTTATCAAAGCATGCTCAAATCCCTCAATAATACGCTCACTGTTCAGTGCTACATTACCTGATTTTGTTGAAGATCGAGCTCGAGAACTCATGCATGATGCTGTTCGGGTGATTGTTGGCAGGAAGAATATGGCTTCTGAAACAATAAAGCAAAAGTTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTCTGGCAATTCGTCAAAGCTTTGCAGAGAGTCTAAATCCTCCAGTATTGGTCTTTGTCCAAAGCAAGGAGCGAGCCAAGGAGCTGTATGGGGAACTTAAATTTGACAACATTAGAGTTGATGTCATCCATTCTGATTTGTCTCAAGAAGAGCGAGAAAATGCTGTTGATAACTTCAGAGCTGGAAAAACATGGGTTTTGATTGCTACTGATGTAGTTGCTCGGGGCATGGATTTCAAAGGTGTGAACTGTGTGATCAATTATGATTTCCCAGATTCTGCTGCTGCATATGTCCACAGAATTGGTCGTTCTGGCAGAGCAGGGAGGACTGGAGAAGCAATTACATTTTACACAGAGGAAGACATTCCGTTCCTGCGGAATGTAGCTAATCTTATGGCAGCATCAGGCTGTGAGGTTCCATCCTGGCTAATGGATTTGCGCAAAAAGAAGTGGAAGAAACACCGGCCCAAAAGAGAGACAATTTCAACCAAACCAGATCTGCCAGGAAACAGTATTAGGTAA 1620 0.4191 MANDSSFLFAGIRFDRKKFGNDIARFQKKDSDNNSVKIFNSAEDENEKTIEPVEQRAHLTKKRKRKGSSTEETVEGFTVFRNSTSADQSKSNDEVREDDESIRLKKEQNKQLERDAIFRKKHNIHVSGYNVPSPLQNFEELRSRYKCQSYILRNLAELGFKEPTPIQRQAIPVLLHGRECFACAPTGSGKTFAFVCPMLMKLKGPEKGGIRAVILCHTRELTAQTYRECKKLAKGKNFHIKLMTKQLVRNADFSKFPCDILISTPLRLRFAIRRKKIDLSRVEYLVLDESDKLFEPELFKQIDSVIKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLVFVQSKERAKELYGELKFDNIRVDVIHSDLSQEERENAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSAAAYVHRIGRSGRAGRTGEAITFYTEEDIPFLRNVANLMAASGCEVPSWLMDLRKKKWKKHRPKRETISTKPDLPGNSIR* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03282 539 MobiDBLite consensus disorder prediction 30 101 - -
Rops8g03282 539 MobiDBLite consensus disorder prediction 520 539 - -
Rops8g03282 539 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 171 341 IPR014001 -
Rops8g03282 539 Pfam Helicase conserved C-terminal domain 371 474 IPR001650 -
Rops8g03282 539 CDD SF2_C_DEAD 353 483 - -
Rops8g03282 539 CDD DEADc_DDX52 151 344 IPR044764 GO:0003724|GO:0005524|GO:0030490
Rops8g03282 539 SMART ultradead3 159 356 IPR014001 -
Rops8g03282 539 Gene3D - 79 340 IPR027417 -
Rops8g03282 539 Coils Coil 95 115 - -
Rops8g03282 539 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 85 521 - -
Rops8g03282 539 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 486 IPR027417 -
Rops8g03282 539 MobiDBLite consensus disorder prediction 72 89 - -
Rops8g03282 539 Pfam DEAD/DEAH box helicase 164 328 IPR011545 GO:0003676|GO:0005524
Rops8g03282 539 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 352 513 IPR001650 -
Rops8g03282 539 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 140 168 IPR014014 GO:0003724
Rops8g03282 539 SMART helicmild6 393 474 IPR001650 -
Rops8g03282 539 Gene3D - 341 518 IPR027417 -
Rops8g03282 539 MobiDBLite consensus disorder prediction 41 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03282 Rops-Chr8 71358900 71363328 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03282 151 512 Eukaryotic Initiation Factors Gene Family AT3G19760 31.868 1.58e-54 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03282 K14779 - gmx:100800969 922.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03282 8 71358900 71363328 Rops8g03282 8 71358900 71363328 ECH