Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03277 ATGTTTCAGTTCAGGATCAAACTAAGGAATGCCAAGATAATGGGGAGGAAGGGAAATTGGTTTTCTACCGTGAAGAAAGCTCTCAGCCCTGACTCAAAGAAATCAAGTAAATCAAAGAAGAAATGGTTTGGGAAGCAAAAATTGCAGACTTCAGGCTCATACTCAGAAACTGATAAAGCACCACCTCTTCCTCCACCAGAAGAGATTAAATTAACTGACATTGAAAATGAAAACAAACACGATCATGTTGCTGAAGTTGCAACTGCCATGGATGCTGTGGAACCTGTTCCATCTGTTCAGACAGCAGCTGTTAGGGTTGAAGCTTCCACATATGCTCGTTTTGCCGGAAAACCAAAGGATGAAGTGGCAGCAATCAAGATTCAAACAGCTTTCCGGGGATACTTGGCAAGAAGAGCATTGCGAGCTTTAAGAGGACTGGTCAGGTTGAGATCATTGATGGAAGGGCCCATTGTAAAACGCCAAGCCAAAAGTACCCTTCGCTCTATGCAGACATTAGCTCGAGTGCAATCTCAGATTCGTTCTAGGAGGATCAGAATGTTAGAGGAGAATCAGGCTCTGCAGAGACAGCTCTTACAGAAGCATGCAAGAGAGCTTGAGACCATGAGGATTGGGGAGGAATGGGATGATAGCCTACAATCAAAAGAACAAATAGAAGCCAAGTTACTAAGCAAGTATGAGGCTGCTATGAGAAGAGAAAGAGCACTGGCTTATGCATTCACTCATCAGCAAAACTGGAAGAACTCATCTAGATCTATAAATCCATTGTTCATGGATCCAACCAATCCTACCTGGGGTTGGAGCTGGTTGGAGCGATGGATGGCAGCCCGGCCTTGGGAGAGCCGTAGCCATGTGGATAAAGAGCTGAATGACCATTCATCTGTAAAAAGTTCAAGCCGCAGCATTACTGGTGGAGAAATCAGCAAATCATTTGCTCGTTTCCAGCTCAATTCTGAAAAGCATTCTCCAGCAGCCAGCCAAAATCCTGGCTCACCTAGCTTGCAGTCCCATGCAACTCCTTCTAGGCCTTCTGCATCAGGTACTAAGAAACTGAAGAAGGCAAGTCCGAGGGGCAGCTGGGGTATGGATGATGACTCCAAAAGCATGGTCAGTGTACAGTCAGACCGGTTCCGGAGGCACTCCATTGCCGGTTCAACAGTTAGAGATGATGAGAGCCTTGCTAGCTCTCCAGCAGTTCCAAGTTATATGGTGCCAACTCAATCTGCAAAAGCCAAGTCCAGGACACAAAGTCCATTAACCCCAGAAAATGGGAAAACAGAAAAGGGGTCCTTTGGGACTGCAAAGAAGCGTCTTTCTTTCCCAGCATCACCTGCTAGACCAAGGCGTCATTCAGGTCCACCAAAGGTGGAAAGCAGCTTAAATGAAGGGTTCACTGTGGACAATGGTGTGGCCAGTTGA 1437 0.4628 MFQFRIKLRNAKIMGRKGNWFSTVKKALSPDSKKSSKSKKKWFGKQKLQTSGSYSETDKAPPLPPPEEIKLTDIENENKHDHVAEVATAMDAVEPVPSVQTAAVRVEASTYARFAGKPKDEVAAIKIQTAFRGYLARRALRALRGLVRLRSLMEGPIVKRQAKSTLRSMQTLARVQSQIRSRRIRMLEENQALQRQLLQKHARELETMRIGEEWDDSLQSKEQIEAKLLSKYEAAMRRERALAYAFTHQQNWKNSSRSINPLFMDPTNPTWGWSWLERWMAARPWESRSHVDKELNDHSSVKSSSRSITGGEISKSFARFQLNSEKHSPAASQNPGSPSLQSHATPSRPSASGTKKLKKASPRGSWGMDDDSKSMVSVQSDRFRRHSIAGSTVRDDESLASSPAVPSYMVPTQSAKAKSRTQSPLTPENGKTEKGSFGTAKKRLSFPASPARPRRHSGPPKVESSLNEGFTVDNGVAS* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03277 478 Pfam IQ calmodulin-binding motif 123 141 IPR000048 GO:0005515
Rops8g03277 478 MobiDBLite consensus disorder prediction 26 69 - -
Rops8g03277 478 SMART iq_5 119 141 IPR000048 GO:0005515
Rops8g03277 478 ProSiteProfiles IQ motif profile. 120 148 IPR000048 GO:0005515
Rops8g03277 478 MobiDBLite consensus disorder prediction 324 354 - -
Rops8g03277 478 PANTHER IQ-DOMAIN 5-RELATED 14 459 - -
Rops8g03277 478 Gene3D - 103 146 - -
Rops8g03277 478 MobiDBLite consensus disorder prediction 324 478 - -
Rops8g03277 478 Pfam Protein of unknown function (DUF4005) 392 456 IPR025064 -
Rops8g03277 478 MobiDBLite consensus disorder prediction 405 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03277 Rops-Chr8 71339795 71346749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03277 14 478 IQD Protein Family AT5G03040 53.955 1.55e-152 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03277 - - gmx:100800080 741.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03277 8 71339795 71346749 Rops8g03277 8 71339795 71346749 ECH
Rops8g03277 8 71339795 71346749 Rops6g01069 6 25136168 25141033 PCT