Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops8g03273 | ATGAGGTGGGTCGAAAACGGAACGCTGGAAATTCCAAAAGAGACGGAGCAGAGGATCGGAAATGGAAGCGGAACAATCTCCATGGATCTATTGGAGTTACTCGACATTTACTTTCCTCATCAACTCTTCACTATCGAAGAAACTTGGCTTAACCTCACGAATGCTCTTCTTTCCTTCTTTTCTTCTCCACCCGGCCAAAACCTCGCTTCTCAGGTGAAAAATGACTATGGAAACCATGTCTTGTCACTTGACTTTCAGCAGCTCAAAAGAATGTGTCATGTTAAGGAATTTTACGAAATGATAATGGAGAAACCTAAAATTGCCCTCTTATGCATGAGTGCTTCTGTTCACAAGGTTTTGCTTTCCAAATGTGACAATCATAGGCCAGAGATTGATGCAAAAGTCGATATCCGTCTTCATAACTGTCCTGAAACCATGATTGCACTGAAGAACTTAAAAGCAGCTTACATTGACAAGCTTGTCTCGGTGCGTGGTACTGCTGTAAAAGTCAGCACTGTCAGGCCTTTGGTGGTAGAAATGAGTTTTGAATGTAGTAAGTGTAAACAAATAATTACGCGTATATTTCCCGATGGAAAATTTTCACCGCCATCAACTTGCAATTTGAATGGCTGCAAGAGCAAAATCTTTAATCCATTGAGATCTACTGCTCAAACTATTGATTTTCAAAAGATAAGAGTTCAAGAATTATTAAAACCTGAAGATCATGAAGAAGGACGGGTGCCTCGAACGGTAGAGTGTGAGCTAACCAAAGATCTTGTGGATGCATGCATACCTGGAGATGTGGTGACTGTTACTGGAATTATAAGAGGAATTAACACCTACATGGATATCGGAGGAGGGAAGTCAAAGAACAGAAACCAAGGATTTTACTATCTGTATCTTGAAGCTATATCCATAAAAAATTCTAAGTCACAGTCTATACCTGAGGATTCACAAGACGCTAATCCAAAAGCTAGACCGACTGAGCTGTTTGATTTATTTTCGTTTTCTTCAAAGGATTTAGAATTTGTTGTGAAGTTTGCGGAGGAGCACGGTTCAGATTTATTTCGGCAAATCCTTCAATCTATATGCCCATCCATCTATGGGCATGAGCTTGTTAAAGCTGGGATAACTCTCGCATTATTTGGTGGTGTACGTAAGCATTCCATGGATCAAAATAAGGTTCCTGTGAGGGGAGATATTCATGTCATAATCGTTGGTGATCCTGGTCTAGGTAAGAGCCAGTTGCTACAAGCAGCAGCAGCTGTTTCTCCACGTGGTATCTATATCTGTGGTAATGCCACAACCAAAGCTGGCCTCACAGTAGCTGTGGTGAAGGATCCCATGACAAGTGACTATGCTTTTGAGGCTGGTGCTATGGTGCTGGCGGACAGTGGATTGTGCTGTATTGATGAGTTTGATAAAATGTCATCAGAGCATCAGGCTTTACTGGAGGCAATGGAGCAACAGTGCGTCTCTATTGCAAAGGCGGGTTTAGTAGCAAGTTTATCATCCCGGACGTCAGTTTTAGCGGCTGCAAACCCTGTTGGTGGTCATTATAACCGGGCAAAAACTGTGAATGAAAATTTGAAAATGAGTGCTGCTCTCCTCTCCCGTTTTGATTTAATTTTCATACTGCTGGACAAACCTGATGAACTTCAGGACAAGCGACTCTCAGAGCACATTATGTCACTTCATGCTAGGTGTGGACAACATTCTCCGGCATTTAAAAAACGACGTGCAGATCCACCTTCTGATTCAAGAGCTGCTGTATCACAGAATGCTGAAAGTGTAGATTTTGGTGTTAGATCTAGTTCTTTAATTTCAAGGTTGAAACTTGACCCACAAAGAGACCGTGATTTTGTTCCATTACCCGGTCAACTCCTTCGCAAATACATCGCTTATGCAAGGAGTTTTGTTTTTCCTAGAATGTCCAAGCCAGCAGCAGAAATCTTACAAAAGTTTTACCTAAAACTGAGAGATCATAATACTTCAGCTGATGGTACTCCTATAACAGCAAGGCAGCTGGAAAGTCTAGTAAGGCTAGCTGAAGCTCGAGCTCGGCTGGACTTGAGAGCAGAAATAACGGCCCAGGATGCAATGGATGTTGTTGAAATCATGAAGGAATCCCTTTATGATAAATATGTTGATGAGCATGGTGTCGTGGATTTTGGTCGAAGTGGGGGGATGAGTCAACAGAAAGAGGCAAAACGCTTTCTAAATGCCCTCAACAAGCAATCGGAACTGGAACAAAAAGATTGCTTCTCAGTATCTGAAATATACAATCTGGCAGATAGGATTTCCTTGAAAGTTCCTGATATTGACACTTTCATCGATAACTTAAACAGCGTTGGATATCTACTCAAAAAAGGACCAAAGACATACCAGGTGTTATCTTCTTCCTATACACGGAGCCAATCGTTTAGGACAAGGGGCTAA | 2439 | 0.4178 | MRWVENGTLEIPKETEQRIGNGSGTISMDLLELLDIYFPHQLFTIEETWLNLTNALLSFFSSPPGQNLASQVKNDYGNHVLSLDFQQLKRMCHVKEFYEMIMEKPKIALLCMSASVHKVLLSKCDNHRPEIDAKVDIRLHNCPETMIALKNLKAAYIDKLVSVRGTAVKVSTVRPLVVEMSFECSKCKQIITRIFPDGKFSPPSTCNLNGCKSKIFNPLRSTAQTIDFQKIRVQELLKPEDHEEGRVPRTVECELTKDLVDACIPGDVVTVTGIIRGINTYMDIGGGKSKNRNQGFYYLYLEAISIKNSKSQSIPEDSQDANPKARPTELFDLFSFSSKDLEFVVKFAEEHGSDLFRQILQSICPSIYGHELVKAGITLALFGGVRKHSMDQNKVPVRGDIHVIIVGDPGLGKSQLLQAAAAVSPRGIYICGNATTKAGLTVAVVKDPMTSDYAFEAGAMVLADSGLCCIDEFDKMSSEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPVGGHYNRAKTVNENLKMSAALLSRFDLIFILLDKPDELQDKRLSEHIMSLHARCGQHSPAFKKRRADPPSDSRAAVSQNAESVDFGVRSSSLISRLKLDPQRDRDFVPLPGQLLRKYIAYARSFVFPRMSKPAAEILQKFYLKLRDHNTSADGTPITARQLESLVRLAEARARLDLRAEITAQDAMDVVEIMKESLYDKYVDEHGVVDFGRSGGMSQQKEAKRFLNALNKQSELEQKDCFSVSEIYNLADRISLKVPDIDTFIDNLNSVGYLLKKGPKTYQVLSSSYTRSQSFRTRG* | 813 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops8g03273 | 812 | Pfam | MCM OB domain | 149 | 277 | IPR033762 | - | |
Rops8g03273 | 812 | Coils | Coil | 470 | 490 | - | - | |
Rops8g03273 | 812 | ProSiteProfiles | MCM family domain profile. | 355 | 562 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Rops8g03273 | 812 | SUPERFAMILY | Nucleic acid-binding proteins | 76 | 279 | IPR012340 | - | |
Rops8g03273 | 812 | MobiDBLite | consensus disorder prediction | 573 | 593 | - | - | |
Rops8g03273 | 812 | Gene3D | - | 333 | 721 | IPR027417 | - | |
Rops8g03273 | 812 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 536 | 544 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Rops8g03273 | 812 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 458 | 472 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Rops8g03273 | 812 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 398 | 413 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Rops8g03273 | 812 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 485 | 498 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Rops8g03273 | 812 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 509 | 521 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Rops8g03273 | 812 | SMART | mcm | 145 | 712 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
Rops8g03273 | 812 | SMART | AAA_5 | 399 | 551 | IPR003593 | GO:0016887 | |
Rops8g03273 | 812 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 365 | 717 | IPR027417 | - | |
Rops8g03273 | 812 | Pfam | MCM AAA-lid domain | 628 | 711 | IPR041562 | - | |
Rops8g03273 | 812 | CDD | MCM8 | 359 | 710 | - | - | |
Rops8g03273 | 812 | CDD | MCM8_WHD | 733 | 798 | - | - | |
Rops8g03273 | 812 | Gene3D | - | 176 | 226 | - | - | |
Rops8g03273 | 812 | Pfam | MCM P-loop domain | 353 | 566 | IPR001208 | GO:0003677|GO:0005524|GO:0032508 | |
Rops8g03273 | 812 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 55 | 749 | IPR031327 | GO:0003677|GO:0005524|GO:0032508 | |
Rops8g03273 | 812 | Gene3D | - | 149 | 278 | IPR012340 | - | |
Rops8g03273 | 812 | FunFam | DNA helicase MCM8 isoform X1 | 176 | 227 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops8g03273 | Rops-Chr8 | 71272343 | 71285915 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops8g03273 | 23 | 798 | Core DNA Replication Machinery Family | AT3G09660 | 71.080 | 0.0 | 1147 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops8g03273 | K10737 | - | gmx:100784549 | 1381.7 |