Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03265 ATGGCGACCGCGGCAGCTCGCCCCATCGTCTCCGTTCAATCCCTCGAGGGCGAGGCGGCACCTAGTGTTCCACTTCCCGATGTCATGAAGGCGTCCATTCGACCCGACATTGTCAATTTCGTTCACTCAAAAATTTCCCGTAACAGTCGCCAACCCTACGCCGTAAGCAAACGTGTCATTAAGGTTCTGAAGCAAATCGGCGCTTTCAACGACGCTGAAAAAGCGAAGAACAGCCGCGGCATTCAGTCGGGGAAAGGGGAAAATGAAGAACTGAAGGTACGCAAGGGTCCTCTTGTTTTGTACGGAACCGAAGGTGCGAAAGCCGTTAAAGCTTTCCGGAACATTCCGGGTGTTGACGTGGTAAACGTTGATAGGTTGAACCTTTTGAAGCTTGCACCGGGTGGTCACCTTGGGAGGTTTGTTATTTGGACGAAAACTGCTTTTGAGAAACTGGACTTTATTCATGGGTCGTTCGAGGAGGTTTCTGAGAAGAAAGGTTACCTGCTTCCTAGGCCCAAGATGGTGAATTCTTATTTGGGCCGGATTATTAACTCTGATGAGGTCCAGTCTATGGTTAGGCCCATTAAGAAAAAGGATGAGGCTTCTATTATCAAGGCTGTCGGAAAAGCATGGTATCAAACCATGGTGTCTGACTCTGATTATGCAGAATTTGACAACTTTTCTAAGTGGCTGGGTGTTTCGCAGTGA 708 0.4859 MATAAARPIVSVQSLEGEAAPSVPLPDVMKASIRPDIVNFVHSKISRNSRQPYAVSKRVIKVLKQIGAFNDAEKAKNSRGIQSGKGENEELKVRKGPLVLYGTEGAKAVKAFRNIPGVDVVNVDRLNLLKLAPGGHLGRFVIWTKTAFEKLDFIHGSFEEVSEKKGYLLPRPKMVNSYLGRIINSDEVQSMVRPIKKKDEASIIKAVGKAWYQTMVSDSDYAEFDNFSKWLGVSQ* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03265 235 PANTHER 60S RIBOSOMAL PROTEIN L4 5 58 IPR045240 -
Rops8g03265 235 Gene3D - 58 193 IPR023574 GO:0003735|GO:0005840|GO:0006412
Rops8g03265 235 Pfam 60S ribosomal protein L4 C-terminal domain 165 199 IPR025755 -
Rops8g03265 235 Pfam Ribosomal protein L4/L1 family 60 152 IPR002136 GO:0003735|GO:0005840|GO:0006412
Rops8g03265 235 Gene3D - 3 57 IPR023574 GO:0003735|GO:0005840|GO:0006412
Rops8g03265 235 SUPERFAMILY Ribosomal protein L4 56 152 IPR023574 GO:0003735|GO:0005840|GO:0006412
Rops8g03265 235 SUPERFAMILY Ribosomal protein L4 9 56 IPR023574 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03265 Rops-Chr8 71159931 71161413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03265 1 58 Cytoplasmic Ribosomal Protein Gene Family AT5G02870 62.903 2.06e-18 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03265 K02930 - csv:101212211 238.039