Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03264 ATGGCTCCTTCAACAACCACTAATGGTTCTGGCAAGAAAGTGAGAAAACCTTACACTATTACCAAGTCTAGGGACAGTTGGTCTGACGAAGAACACGACAAGTTTCTCGAAGCTCTTCAATTATTTGACAGAGATTGGAAGAAAATTGAAGATTTTGTAGGTTCAAAAACGGTTATTCAGATTCGAAGCCATGCCCAGAAATATTTCTTGAAAGTTCAAAAAAATGGGACAGTAGCACATGTGCCTCCACCTCGTCCTAAGCGCAAAGCTGCTCATCCTTACCCACAAAAGGCATCCAAAAATGTTTTGGTGCCATTGCCAGCATCTATGGCTTATTTTTCTTCCTCTAATACCCTTGCACCTGGTTATGTCACATGGGATGAAAGTTCCATGCTCATGAACTCTGGTTCCAGCAAATCCATGCCCTGTCAGAATGAACTCACCAATCTTCATGGAAATGAAGCTGATATTGGATCAAAGGGGTTAACACGAATTGGCAACAGCAGTCTTAGTGGTATTGGGAACTCTGCTAGAAAGCTGCCACCAACCGAGATGCCAAAGCAAGGGAAACAGGTTCCAGTGCTTCATGGTTTGCCAGATTTTGCTGAAGTTTACAGCTTCATTGGAAGTGTTTTTGATCCAGCTACCAAAGACCATGTCCACAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGTTAATGAAAAACCTCACCGTCAACTTGTCTAGCCCTGACTTTGAGCCCGTTAGGAAGGGCTTGTCATTATATGGTGTCAATACCAAGACAGTAGGAGTTACTGCAGGAATTGATGTGAAGAACCAGACAAATGATCTATCATGTCAAACCACTTGA 864 0.4213 MAPSTTTNGSGKKVRKPYTITKSRDSWSDEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLVPLPASMAYFSSSNTLAPGYVTWDESSMLMNSGSSKSMPCQNELTNLHGNEADIGSKGLTRIGNSSLSGIGNSARKLPPTEMPKQGKQVPVLHGLPDFAEVYSFIGSVFDPATKDHVHKLKEMDPINFETVLLLMKNLTVNLSSPDFEPVRKGLSLYGVNTKTVGVTAGIDVKNQTNDLSCQTT* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03264 287 SUPERFAMILY Homeodomain-like 18 74 IPR009057 -
Rops8g03264 287 SMART sant 23 71 IPR001005 -
Rops8g03264 287 Pfam Myb-like DNA-binding domain 24 69 IPR001005 -
Rops8g03264 287 Gene3D - 27 74 - -
Rops8g03264 287 ProSiteProfiles SANT domain profile. 22 75 IPR017884 -
Rops8g03264 287 PANTHER SWI/SNF COMPLEX-RELATED 10 246 - -
Rops8g03264 287 FunFam protein REVEILLE 6 isoform X1 26 74 - -
Rops8g03264 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 73 IPR017930 -
Rops8g03264 287 CDD SANT 26 69 IPR001005 -
Rops8g03264 287 NCBIfam myb-like DNA-binding domain, SHAQKYF class 22 71 IPR006447 GO:0003677
Rops8g03264 287 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03264 Rops-Chr8 71156097 71159363 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Rops8g03264 Myb_DNA-binding 4.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03264 - - gmx:100783482 481.485