Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03263 ATGCCGCCGAAGCAGCAATCCAAAGCTGATTTAGCGAAGAAGCAGAAGATCGTAGAGGACAAAACCTTCGGTCTCAAAAACAAAAGCAAAAGCAAAAACGTTCAGAAATATGTGCAGAATCTCAAACAATCCGTACAACCCAAGCCCGATCCTTCCAAAGTCGCTACCAAGAAAAAGAAGGAGGAAGAGAAGGCCAAGGACAAGGAATTGAATGATTTGTTCAAAATTGCGGTTAGTCAACCTAAAGTGCCAGTTGGTGTTGATCCTAAGTCTATATTATGTGAGTTTTACAAAGCGGGACAGTGTGCCAAGGGCTTCAAGTGCAAGTTTTCCCATGATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGATCTTTATAGTGATAAACGTGACCAGGAAACAATGGACGATTGGGATCAGGAGACCTTGGAGAAGGTGGTGGAATCAAAGAGAACCGAGTATAAGCAGAATAAACCAACTGATATAGTTTGTAAATACTTTCTGGAAGCAGTGGAGAAGAAGCAATATGGTTGGTTCTGGGTTTGCCCCAATGGCGGTAAGAATTGCCACTATAGACATGCCCTTCCCCCTGGATATGTTTTAAAATCTCAAATGAAGGCTCTATTAGAGGAGGAAACTGAAAAAATAACAATAGAGGAGGATATTGAAAATCAGCGTGCCAAAGTGACAACTTCAACTCCTATGACTCCTGAATTATTCATGCAATGGAAGAAGAAGAAAATAGAAGAGAGAGATGCCAATTTGGCTGCCCAGCAGGCAGAGAGGGCTAAGAATGACCGCATGAGTGGTCGTGAGCTATTTTTATCAGATGCTAGCTGGTTTGTGGATGATGCTGAAGCATATGACAAGTACCAGAGGGAACCAGAATCTTATGACACTGAACAGAAGGCGACTGGGAATGCTACTGACGAAGGTCCGAGCACCTCAAAAGCTAGTACTGATGTTGAAGATCCTGATGATGTTGATGATGATGAACTGGACTTGGATGAGTTGAATGAATTGGAAGCAAGCTTGTCAAAGACATCAATCCAAATAAAGGAATAA 1065 0.4207 MPPKQQSKADLAKKQKIVEDKTFGLKNKSKSKNVQKYVQNLKQSVQPKPDPSKVATKKKKEEEKAKDKELNDLFKIAVSQPKVPVGVDPKSILCEFYKAGQCAKGFKCKFSHDLNVQRKGEKIDLYSDKRDQETMDDWDQETLEKVVESKRTEYKQNKPTDIVCKYFLEAVEKKQYGWFWVCPNGGKNCHYRHALPPGYVLKSQMKALLEEETEKITIEEDIENQRAKVTTSTPMTPELFMQWKKKKIEERDANLAAQQAERAKNDRMSGRELFLSDASWFVDDAEAYDKYQREPESYDTEQKATGNATDEGPSTSKASTDVEDPDDVDDDELDLDELNELEASLSKTSIQIKE* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03263 354 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Rops8g03263 354 MobiDBLite consensus disorder prediction 323 339 - -
Rops8g03263 354 Coils Coil 246 266 - -
Rops8g03263 354 Gene3D - 87 204 - -
Rops8g03263 354 ProSiteProfiles Zinc finger C3H1-type profile. 158 196 IPR000571 GO:0046872
Rops8g03263 354 Pfam DRG Family Regulatory Proteins, Tma46 215 300 IPR032378 -
Rops8g03263 354 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 354 - -
Rops8g03263 354 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Rops8g03263 354 SMART c3hfinal6 158 195 IPR000571 GO:0046872
Rops8g03263 354 Coils Coil 208 228 - -
Rops8g03263 354 MobiDBLite consensus disorder prediction 40 66 - -
Rops8g03263 354 SUPERFAMILY CCCH zinc finger 88 113 IPR036855 GO:0046872
Rops8g03263 354 MobiDBLite consensus disorder prediction 291 354 - -
Rops8g03263 354 MobiDBLite consensus disorder prediction 52 66 - -
Rops8g03263 354 Gene3D - 205 279 - -
Rops8g03263 354 MobiDBLite consensus disorder prediction 301 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03263 Rops-Chr8 71145068 71148179 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops8g03263 DFRP_C 2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03263 - - gmx:100806617 596.66