Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03240 ATGTCTGGCCTAACACCACCACCACTAACACCTCCCAACGACGACAGGTTCCATTTCTTCAAGCAATCCATGGAGCTGGTTCAACTCCCAAACCCACCACCCAGAACCCGAACCCGAAACCGAAACCATCTCTCTCCCACCCTCGGTGAGCTCCTCAAACGTGTGGAAGATGCTCAAAACCACAACAACAACACTGCTTCTGTTAATGAAACCCACCATGTTCTTGACTTTTCATCCACTCTTCCCTCTCACCCCTTTTTTCTCTCCTTTAGTAACTTAACTTACAGCGTCAAGCTCCACCGCAAGATGACCCTCTCCCCATGCTTTTCAACTAACCACGATTCCCCGCCGGCAAACGAGCTGGCCGAAACCAAACCCAACAGCACCAAGATTCTCCTCAACGACATCTCCGGCGAGGCCAGGGACGGCGAGATCATGGCAGTTTTGGGAGCCAGCGGCTCCGGCAAGTCGACACTCATTGACGCCCTCGCCGACCGGATTTCCAAGGAGAGCCTCAAAGGCACCATCACCTTAAACGGCGACGTTTTGGAATCGAGTCTCCTTAAGGTGATATCTGCTTACGTCATGCAAGACGATCTTCTCTTCCCTATGCTCACCGTGGAAGAGACTCTCATGTTCTCCGCAGAGTTCAGACTCCCTCGCTCACTCTCCAAGTCCAAGAAGAAAGCTCGTGTCCAAGCCCTCATCGACCAGCTCGGCCTCCGTTCCGCCGCCACAACCGTCATAGGGGATGAAGGTCACCGCGGCGTATCCGGCGGAGAACGCCGCCGTGTCTCCATCGGAATCGACATCATCCACGACCCTATCGTGCTGTTCCTCGACGAACCAACCTCCGGCCTTGACTCCACCAGCGCCTTCATGGTGGTGAAGGTGTTGCAACGAATCGCTCAGAGTGGAAGCATCGTCATCATGTCCGTTCACCAACCTAGCTACCGTATCCTCGGCTTATTGGACCGCCTCATCTTCCTCTCTCGCGGCCAAACCGTGTTCAGCGGCTCTCCGACGACGCTCCCTCACTTCTTCTCGGAATTCGGCCACCCTATACCGGAAAACGAGAACCGGACGGAGTTCGCACTGGACCTAATCCGCGAACTGGAAGAAACCCCCGGTGGAACAAAAGGCCTTGTGGAGTTCAACAAATCATGGCAGTTGAGGAACAAACCGTCAACTGAAAAAACCGTTAACGGACCCAAAATATCGTTGAAGGACGCCATCAGCGCTAGCGTTTCAAGAGGCAAACTGGTGTCGGGCGCTAACGGCAACAACTCAACGGCGTCAGTTCCCACGTTTGCTAATCCGTTTTGGATGGAAATGGTGGTTATAGGAAAACGGTCTCTAACAAACTCACGGAGAATGCCCGAATTATTCGGAATCCGTTTGGGTGCAGTTCTCGTGACTGGGGGAATCTTGGCCACCATCTTTTGGGGCCTTGACAATTCCCCAAAAGGGGTTGAAGAGCGTTTGGGGTTCTTCGCTTTCGCCATGTCCACCACCTTCTACACTTGCGCTGAAGCAATCCCAGTTTTTCTTCAAGAACGTTATATCTTCATGAGGGAAACTGCTTACAACGCTTACCGTCGCTCCTCTTACGTTCTCGCTCACTCCATCATCTCACTCCCTTCTCTTATCTTCCTCTCACTTGCCTTCGCCGCCACGACATTCTGGTCGGTGGGGCTCGCCGGCGGCACCTCTGGTTTCTTTTTCTACTTTTTCACCATCCTGGCTTCCTTCTGGGCGGGGAGCTCCTTTGTTACGTTTCTCTCTGGGGTGGTGTCACACGTGATGTTGGGTTTCACTGTTGTGGTTGCAATCATGGCTTATTTCCTTCTCTTCAGTGGGTTCTTCATAAGCAGGGATAGGATCCCACCATACTGGATTTGGTTCCATTACTTGTCACTTGTGAAGTATCCTTTTGAAGGTGTGTTGCAGAACGAGTTTAATGTTAGTCCTCCGAGGTGCTTCGTGACGGGGATTCAGATGTTCGATAACACGCCGTTGGGGGCGGTGCCGGAGTCACTGAAGGTTGCGCTGTTGAAGAGCATGAGCGGGACGCTGGGAATGAACATTAGCAGCTCCACGTGCGTCCTCACCGGAGCGGATATACTGAAGCAGCAGGGGATCACGCAGCTTGGGAAATGGAGCTGCTTATGGGTCACCATTGCTTGGGGTTTCTTCTTTCGCTTCCTCTTTTACTTGGCGCTGCTCTTTGGAAGCAGGAACAAGAGGAGGTAG 2253 0.5282 MSGLTPPPLTPPNDDRFHFFKQSMELVQLPNPPPRTRTRNRNHLSPTLGELLKRVEDAQNHNNNTASVNETHHVLDFSSTLPSHPFFLSFSNLTYSVKLHRKMTLSPCFSTNHDSPPANELAETKPNSTKILLNDISGEARDGEIMAVLGASGSGKSTLIDALADRISKESLKGTITLNGDVLESSLLKVISAYVMQDDLLFPMLTVEETLMFSAEFRLPRSLSKSKKKARVQALIDQLGLRSAATTVIGDEGHRGVSGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIMSVHQPSYRILGLLDRLIFLSRGQTVFSGSPTTLPHFFSEFGHPIPENENRTEFALDLIRELEETPGGTKGLVEFNKSWQLRNKPSTEKTVNGPKISLKDAISASVSRGKLVSGANGNNSTASVPTFANPFWMEMVVIGKRSLTNSRRMPELFGIRLGAVLVTGGILATIFWGLDNSPKGVEERLGFFAFAMSTTFYTCAEAIPVFLQERYIFMRETAYNAYRRSSYVLAHSIISLPSLIFLSLAFAATTFWSVGLAGGTSGFFFYFFTILASFWAGSSFVTFLSGVVSHVMLGFTVVVAIMAYFLLFSGFFISRDRIPPYWIWFHYLSLVKYPFEGVLQNEFNVSPPRCFVTGIQMFDNTPLGAVPESLKVALLKSMSGTLGMNISSSTCVLTGADILKQQGITQLGKWSCLWVTIAWGFFFRFLFYLALLFGSRNKRR* 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03240 750 Pfam ABC transporter 133 285 IPR003439 GO:0005524
Rops8g03240 750 Gene3D - 123 348 IPR027417 -
Rops8g03240 750 SMART AAA_5 142 334 IPR003593 GO:0016887
Rops8g03240 750 ProSitePatterns ABC transporters family signature. 257 271 IPR017871 GO:0005524|GO:0016887
Rops8g03240 750 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 116 357 IPR003439 GO:0005524
Rops8g03240 750 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 56 738 - -
Rops8g03240 750 FunFam ABC transporter G family member 6 122 348 - -
Rops8g03240 750 Pfam ABC-2 type transporter 314 445 IPR043926 GO:0140359
Rops8g03240 750 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 129 349 IPR027417 -
Rops8g03240 750 Pfam ABC-2 type transporter 446 653 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03240 Rops-Chr8 70941468 70943720 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03240 132 317 Calmodulin-binding Proteins AT2G36910 29.630 4.98e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03240 K05681 - gmx:100803426 1124.38