Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03239 ATGGGGAAAGGAGGCGAAAATTATGGGAGAAAAGAGAACACGAGTTCTGAGACTTCGGATCGTGAAATCTTCAAGGCTTGGGCGAAGGAAGTGCGTGAATGCGAGGAACACTTTAAGGTGAGAGTGAAAACTGGTTTAAGTCACGATGAGGTTGAGAATCGTCGCAAGATCTATGGCTTGAACGAACTTGAGAAGCACGAGGGGCAATCTATTTGGAGTTTGATTTTGGAGCAGTTTAATGACACGTTAGTTCGGATTCTTCTCGGCGCCGCCATAATCTCTTTCGTGCTGGCTTGGTATGACGGCGAAGAAGGCGGCGAGATGGAGATTACGGCGTTCGTGGAGCCTCTGGTGATTTTCCTGATATTGATTGTGAACGCAATTGTTGGTGTATGGCAAGAGAGCAATGCGGAGAAAGCACTTGAGGCACTGAAGGAGATTCAGTCAGAACACGCTATGGTGATTCGAGATAGCGTGAAAATCCCTAGTTTACCAGCGAAGGATCTTGTTCCCGGTGATATTGTGGAGCTTAAGGTTGGGGATAAGGTTCCTGCAGATATGAGGGTTGTGCAATTGATAAGCTCCACTTTGAGATTGGAACAGGGTTCCTTGACTGGGGAAAGTGAAGCAGTGAATAAGACTAACAAACCTGTTTCTGAGGATGCTGATATTCAAGGGAAGAGGTGTATGGTTTTCGCAGGGACTACTGTTGTTAATGGAAACTGCATTTGTTTGGTAACTCAGACTGGAATGGAAACTGAGATTGGGAAGGTGCATAAGCAGATACACGTGGCGTCTCAGAGTGAGGATGATACCCCCTTGAAGAAGAAACTCAATGACTTCGGAGAGAAGCTAACCATGATGATTGGTTTTATATGTCTTTTGGTTTGGCTCATTAATGTTAAGTACTTCCTAACTTGGGATTATGTTGATGGGTGGCCGAGGAACTTTAAGTTTTCATTTGAGAAGTGTACTTATTACTTTGAGATTGCTGTGGCATTGGCTGTGGCTGCTATTCCAGAGGGTTTGCCTGCAGTCATCACAACATGTCTTGCATTAGGTACTCGCAAGATGGCCCAGAAGAATGCCCTGGTTCGGAAGCTACCAAGCGTGGAAACTTTGGGTTGTACAACTGTGATTTGTTCAGATAAAACTGGTACATTGACTACGAACCAAATGTCTGTGACAAAACTAGTAGCTATTGGCACTAATGTAGACTCACTGCGAGCCTTCAAGGTGGAAGGAACTACGTACAATCCATCAGATGGTCAAATAGAGAACTGGCCAGCAGGACAATTGGATGCTAATCTTCAGATGATAGCAAAAATAGCTGCTGTCTGTAATGATGCTGGAGTCACACAGTCAGAGCACAAGTTTGTCGCCCATGGAATGCCCACTGAAGCGGCCTTAAAGGTTTTGGTAGAGAAGATGGGCCTTCCTGAAGGATCCAAGGATGCACGATCAGCAAACACGAATACCTTATTACGTTGTTGTGAATGGTGGAATGAACATTGCCGGCGGATTGCTACTCTTGAGTTCGACCGTGACAGGAAGTCAATGGGGGTTATTGCAGACTCTGGTCTTGGGAAAAAATCTCTGCTGGTTAAGGGTGCTGTAGAAAATGTGTTGGACAGAAGCTCTAAAATTCAGTTGCGTGATGGTTCTATTGTGAAACTGGATGATAATGCTAGGAACCTCGTATTGCAAGCTCTTCATGAAATGTCAACGAGAGCATTACGCTGTTTGGGATTTGCATACAAGGATGAACTCCCCGACTTTGAAAATTACGGTGGTAATGACGATCATCCAGCCCACCAGCTTTTGCTTAATCCTTCCAACTATTCATCAATTGAAAGTGAACTTATTTTTGTTGGCTTGGTTGGCTTGAGGGATCCTCCTAGGGAAGAGGTATACCAAGCAATTGAAGACTGTAGAGCAGCTGGAATTCGTGTTATGGTTATAACTGGAGACAACAAGAACACTGCTGAAGCTATATGCCGTGAAATAGGTGTATTTACACCCGATGAAGACATTAGTTCAAAAAGTTTAACTGGTAGAGATTTTATGGAACTCCGTGATAAAAAAGCCTATCTGAGACAGAGTGGTGGGCTTTTGTTTTCAAGGGCTGAACCAAGGCACAAGCAAGAAATTGTGAGGCTTCTTAAAGATGAAGGGGAGGTGGTGGCCATGACTGGGGATGGTGTTAATGATGCGCCTGCCTTGAAGCTTGCAGACATTGGTATTGCAATGGGTGTTGCTGGGACAGAGGTTGCAAAAGAAGCTTCAGATATGGTGTTGGCAGACGATAATTTTAGTTCAATTGTTGCTGCGGTTGGTGAAGGTAGATCTATCTACAATAATATGAAGGCTTTTATCAGGTACATGATCTCTTCCAATATTGGCGAGGTTGCTTCTATATTTCTAACAGCTGCATTAGGTATTCCTGAAGGATTGATACCTGTCCAGCTTCTGTGGGTCAATCTTGTCACTGATGGACCCCCTGCAACGGCTTTGGGATTTAATCCTCCAGATAAGGACATAATGAAGAAGCCTCCGCGTCGCAGTGATGATTCACTGATTAACTTGTGGATTCTATTCCGCTATCTGGTTATTGGGACGTACGTTGGATTAGCTACGGTTGGTATCTTCATCATATGGTATACACACGGTTCGTTCTTGGGTATTGACCTTAGCGGGGATGGGCATTCTCTTGTCACTTACTCCCAACTTGCCAACTGGGGTCAATGCTCCTCGTGGAAGAACTTCACTGCTTCTCCCTTCACCGCTGGTGCTAGAACTATCTCTTTTGATGACCCCTGTGACTACTTCAAGACTGGTAAAGTGAAAGCTATGACACTGTCCCTTTCGGTGTTGGTAGCCATTGAAATGTTCAACTCTCTCAATGCCCTGTCTGAAGATGGAAGCCTTTTGTCAATGCCCCCTTGGGTCAACCCTTGGCTTCTTTTGGCCATGTCTGTGTCATTTGGTCTGCACTTTTTGATCTTGTACGTGCCATTCTTAGCACAAGTATTTGGCATCGTACCTCTGAGCTTCAATGAGTGGCTTTTGGTTTTGGTGGTTGCACTTCCTGTCATCCTGATTGACGAGATTCTGAAATTTGTGGGGAGGTGTACGAGTGGGTCCCAAGCATCAAGTGCAAAAAGATCAAAGCGAAAATCAGAGTAG 3186 0.4476 MGKGGENYGRKENTSSETSDREIFKAWAKEVRECEEHFKVRVKTGLSHDEVENRRKIYGLNELEKHEGQSIWSLILEQFNDTLVRILLGAAIISFVLAWYDGEEGGEMEITAFVEPLVIFLILIVNAIVGVWQESNAEKALEALKEIQSEHAMVIRDSVKIPSLPAKDLVPGDIVELKVGDKVPADMRVVQLISSTLRLEQGSLTGESEAVNKTNKPVSEDADIQGKRCMVFAGTTVVNGNCICLVTQTGMETEIGKVHKQIHVASQSEDDTPLKKKLNDFGEKLTMMIGFICLLVWLINVKYFLTWDYVDGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMSVTKLVAIGTNVDSLRAFKVEGTTYNPSDGQIENWPAGQLDANLQMIAKIAAVCNDAGVTQSEHKFVAHGMPTEAALKVLVEKMGLPEGSKDARSANTNTLLRCCEWWNEHCRRIATLEFDRDRKSMGVIADSGLGKKSLLVKGAVENVLDRSSKIQLRDGSIVKLDDNARNLVLQALHEMSTRALRCLGFAYKDELPDFENYGGNDDHPAHQLLLNPSNYSSIESELIFVGLVGLRDPPREEVYQAIEDCRAAGIRVMVITGDNKNTAEAICREIGVFTPDEDISSKSLTGRDFMELRDKKAYLRQSGGLLFSRAEPRHKQEIVRLLKDEGEVVAMTGDGVNDAPALKLADIGIAMGVAGTEVAKEASDMVLADDNFSSIVAAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLINLWILFRYLVIGTYVGLATVGIFIIWYTHGSFLGIDLSGDGHSLVTYSQLANWGQCSSWKNFTASPFTAGARTISFDDPCDYFKTGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLSMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQVFGIVPLSFNEWLLVLVVALPVILIDEILKFVGRCTSGSQASSAKRSKRKSE* 1062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03239 1061 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 238 411 - -
Rops8g03239 1061 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 388 629 IPR023299 GO:0000166
Rops8g03239 1061 Pfam E1-E2 ATPase 147 361 - -
Rops8g03239 1061 Gene3D - 378 776 IPR023214 -
Rops8g03239 1061 FunFam ECA1 (ER-TYPE CA2+-ATPASE 1) 795 1049 - -
Rops8g03239 1061 FunFam Calcium-transporting P-type ATPase, putative 627 776 - -
Rops8g03239 1061 SUPERFAMILY HAD-like 379 835 IPR036412 -
Rops8g03239 1061 FunFam calcium-transporting ATPase, endoplasmic reticulum-type 391 632 - -
Rops8g03239 1061 Gene3D - 391 632 IPR023299 GO:0000166
Rops8g03239 1061 SFLD p-type atpase 362 783 IPR044492 -
Rops8g03239 1061 SMART Cation_ATPase_N_a_2 25 99 IPR004014 -
Rops8g03239 1061 ProSitePatterns E1-E2 ATPases phosphorylation site. 383 389 IPR018303 -
Rops8g03239 1061 SUPERFAMILY Calcium ATPase, transmembrane domain M 26 1044 IPR023298 -
Rops8g03239 1061 SUPERFAMILY Calcium ATPase, transduction domain A 150 261 IPR008250 -
Rops8g03239 1061 SFLD Haloacid Dehalogenase 362 783 - -
Rops8g03239 1061 FunFam Calcium-transporting ATPase, putative 127 263 - -
Rops8g03239 1061 Pfam haloacid dehalogenase-like hydrolase 378 745 - -
Rops8g03239 1061 Gene3D - 77 1043 - -
Rops8g03239 1061 Gene3D - 44 265 - -
Rops8g03239 1061 PRINTS P-type cation-transporting ATPase superfamily signature 200 214 - -
Rops8g03239 1061 PRINTS P-type cation-transporting ATPase superfamily signature 755 767 - -
Rops8g03239 1061 PRINTS P-type cation-transporting ATPase superfamily signature 731 750 - -
Rops8g03239 1061 PRINTS P-type cation-transporting ATPase superfamily signature 381 395 - -
Rops8g03239 1061 PRINTS P-type cation-transporting ATPase superfamily signature 625 636 - -
Rops8g03239 1061 PRINTS P-type cation-transporting ATPase superfamily signature 647 657 - -
Rops8g03239 1061 NCBIfam HAD-IC family P-type ATPase 705 812 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops8g03239 1061 NCBIfam HAD-IC family P-type ATPase 320 403 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops8g03239 1061 NCBIfam HAD-IC family P-type ATPase 118 228 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops8g03239 1061 PANTHER CALCIUM-TRANSPORTING ATPASE 27 1053 - -
Rops8g03239 1061 Pfam Cation transporting ATPase, C-terminus 816 1041 IPR006068 -
Rops8g03239 1061 Pfam Cation transporter/ATPase, N-terminus 27 94 IPR004014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03239 Rops-Chr8 70932088 70938663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03239 1 1061 Primary Pumps ATPases(2) AT1G07670 79.190 0.0 1734
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03239 K01537 - gmx:100788807 1944.47