Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03223 ATGGACAAAAGACCCAGGAAGAGACCTCGTTTAACGTGGGATAATAACCCCCCTCCTCCTCCTCCTCCTAAGATTCTTCCTGCAATATATTGCGGCCAAGAGGTTGGGAATGGAATGGTTCCAAATCATACTCATCCTTCCTTGTTTTATAGGGGAATGCCTTGCAATGGATCACCCCCTTGGAGGCCGGATGATAAAGATGGCCACTACGTTTTTGTGGTTGGTGAAAATTTAACACCTCGATACCGAATTCTCAGCAAAATGGGTGAAGGAACTTTTGGTCAAGTCCTGGAATGTTTTGACAATGAAAAGACAGAAGCTGTGGCAATAAAAATTGTTCGCTCCATAAATAAGTATCGTGAGGCTGCAATGACTGAAATTGATGTCTTGCTGAGGCTAGCCAGACATGATGTTGACGGTGCACGTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTGTATTTGAGAAGCTTGGACCAAGCTTATATGATTTTCTCCGCAAAAACAGCTATCGTTCTTTTCCCATTGATCTTGTTCGGGAGTTTGGCAGACAACTTTTGGAGTCTGTAGCATTTATGCATGACTTATGCTTGATTCACACTGATTTGAAGCCAGAGAATATTCTTCTTGTCTCACCGGAATTCATTAAAGTGCCAGACTACAAGTTTCTGTCACGGACCAGGAAAGATGGCTCCTATTTCAAGAATCTACCCAGGTCAAGTGCCATTAAGCTCATTGATTTTGGGAGTACCACATTTGAACATCAAGATCACAGTTATGTGGTGTCAACAAGACACTATCGAGCACCGGAAGTTATCTTAGGTCTTGGGTGGAACTATCCTTGTGATCTTTGGAGTGTGGGCTGCATATTGGTTGAGCTTTGCTCTGGTGAGGCACTTTTCCAAACACACGAGAATTTGGAACATCTTGCCATGATGGAGAGAGTGTTAGGGCCACTACCTTCCCATATGGTGGTCAGGGCTGATCATCGAGCTGGGAAGTATTTTAAAAGAGGTGCACGATTAGGTTGGCCTGATAGTTCAACTTCAAGAGAAAGCATGAGGGCAGTTTGGAAATTGCCACGTTTGCCGAACCTTATAATGCAGCATGTTGATCATTCTGCTGGCGATTTGATTGACCTCTTGCAAGGGCTCCTAAGGTATGACCCTGCCGAACGGCTTAAAGCAATGGAAGCATTAAGACATCCCTTCTTCTTCCCAAGAGATCCTAAAAGATATGGTTACCCTTTATAA 1269 0.4342 MDKRPRKRPRLTWDNNPPPPPPPKILPAIYCGQEVGNGMVPNHTHPSLFYRGMPCNGSPPWRPDDKDGHYVFVVGENLTPRYRILSKMGEGTFGQVLECFDNEKTEAVAIKIVRSINKYREAAMTEIDVLLRLARHDVDGARCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREFGRQLLESVAFMHDLCLIHTDLKPENILLVSPEFIKVPDYKFLSRTRKDGSYFKNLPRSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPSHMVVRADHRAGKYFKRGARLGWPDSSTSRESMRAVWKLPRLPNLIMQHVDHSAGDLIDLLQGLLRYDPAERLKAMEALRHPFFFPRDPKRYGYPL* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03223 422 ProSiteProfiles Protein kinase domain profile. 82 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g03223 422 CDD PKc_CLK 69 410 - -
Rops8g03223 422 FunFam Serine/threonine-protein kinase AFC2 158 410 - -
Rops8g03223 422 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 54 411 - -
Rops8g03223 422 Gene3D Phosphorylase Kinase; domain 1 69 162 - -
Rops8g03223 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Rops8g03223 422 SUPERFAMILY Protein kinase-like (PK-like) 69 414 IPR011009 -
Rops8g03223 422 Gene3D Transferase(Phosphotransferase) domain 1 136 410 - -
Rops8g03223 422 MobiDBLite consensus disorder prediction 1 24 - -
Rops8g03223 422 Pfam Protein kinase domain 82 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g03223 422 SMART serkin_6 82 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03223 Rops-Chr8 70510708 70516209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03223 73 410 Core Cell Cycle Gene Families AT1G76540 25.926 3.53e-29 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Rops8g03223 Pkinase 1.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03223 K08287 - gmx:100808061 792.727