Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03219 ATGAAGAGACAGAGAGAGAATGAAGGTACAGAGAGCTTAGATTTGGTAAATTGTCTGATGATGCTCTCTTGTCCACAACAGAAAAGCTCTGAGCCCTTGGAATTTGAGTGCAAAACCTGCAACCGCAAATTCTCTTCCTTTCAAGCCCTTGGTGGCCACAGGGCTAGCCACAAGAAGCTGAAACTAGACGGGGAAGACGAACTCAAAGAACAAGCTAAATCTCTGAGCTTGTGGAATAAACCCAAAATGCATCAGTGCTCTATTTGTGGCATGGGATTCTCTCTGGGTCAGGCACTTGGAGGTCACATGAGAAAGCACAGAGCTGCCATCAATGAAGGGCTTTCTTCTATCAACCAAGTCATTGCAAAAATCCCAGTTCTGAAAAGATCTAATAGTAAGAGGGTTATGTGCTTGGACTTGAACTTGACCCCTCTAGAGAATGACTTGATGTTTGGAATGAAGTCACCCCCACTTCCACTTTCTTTGTTCTGA 492 0.4431 MKRQRENEGTESLDLVNCLMMLSCPQQKSSEPLEFECKTCNRKFSSFQALGGHRASHKKLKLDGEDELKEQAKSLSLWNKPKMHQCSICGMGFSLGQALGGHMRKHRAAINEGLSSINQVIAKIPVLKRSNSKRVMCLDLNLTPLENDLMFGMKSPPLPLSLF* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03219 163 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 106 IPR013087 -
Rops8g03219 163 SUPERFAMILY beta-beta-alpha zinc fingers 35 106 IPR036236 -
Rops8g03219 163 PANTHER ZINC FINGER PROTEIN ZAT5 9 147 - -
Rops8g03219 163 Gene3D Classic Zinc Finger 33 106 - -
Rops8g03219 163 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Rops8g03219 163 SMART c2h2final6 35 57 IPR013087 -
Rops8g03219 163 SMART c2h2final6 84 106 IPR013087 -
Rops8g03219 163 Pfam C2H2-type zinc finger 35 59 - -
Rops8g03219 163 Pfam C2H2-type zinc finger 84 108 - -
Rops8g03219 163 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Rops8g03219 163 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03219 Rops-Chr8 70454536 70455172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03219 1 157 C2H2 Transcription Factor Family AT2G37430 47.977 2.95e-43 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops8g03219 zf-C2H2_6 1.1e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03219 - - aprc:113870747 240.35