Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03209 ATGGCTTTTTTCTCTGGAGTCCAGCGCTTGCTTCGCCAGTCCCCACATCTTCACACTTCGATTCGTCTCAGTTCTACTCTCACTACCCCCAAACTTTTCGTCAGCGGTCTTTCAAGACTGACAACAGATCAAAAGCTTACGGAAGCATTTTCTCCTTTTGGACAGCTGATGGAAGCTAAGGTGGTAACTGATAGAGGCTCTGGAAGATCAAAGGGTTTCGCTTTTGTAACTTATGCAACCATAGAAGAAGCTGAAAAGGCAAGAGAAGGAATGAATGCTAAATTTTTGGATGGATGGGTTATATTTGTTGATCCTGCCAAACCAAGAGAGCCCAGACCACCTCAGCAATCACAGTCTAAGCCCTCTGAAACAGGTTTCACAGTTAACAAGACGATTGGGTGGTGTGGTTGA 411 0.4501 MAFFSGVQRLLRQSPHLHTSIRLSSTLTTPKLFVSGLSRLTTDQKLTEAFSPFGQLMEAKVVTDRGSGRSKGFAFVTYATIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPQQSQSKPSETGFTVNKTIGWCG* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03209 136 FunFam RNA binding protein 17 130 - -
Rops8g03209 136 Gene3D - 13 121 IPR012677 -
Rops8g03209 136 SUPERFAMILY RNA-binding domain, RBD 29 126 IPR035979 GO:0003676
Rops8g03209 136 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 98 IPR000504 GO:0003723
Rops8g03209 136 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Rops8g03209 136 SMART rrm1_1 31 104 IPR000504 GO:0003723
Rops8g03209 136 PANTHER NUCLEOLAR PROTEIN 8 19 135 - -
Rops8g03209 136 MobiDBLite consensus disorder prediction 106 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03209 Rops-Chr8 70299783 70302562 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03209 32 112 Eukaryotic Initiation Factors Gene Family AT3G16380 38.272 1.23e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03209 - - gmx:100306326 221.09