Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03188 ATGAACCACTGTGTTCCAGATTTTGAAACAATGGATGATGACCAAGAACACCTAATTCCCATGCCTTCAGGGTTACATCCTCGAGCAAAGAAACCCTCCATTGCAGACGATGATATCATGGAGCTGTTATGGCAAAACGGCCAGGTCGTTATGCAGAGTCAGAACCAACGTCCTCTGAGAAAACCGCCGCAGGCGAGAGACTCCGGCGATGCCGGTCCTTCGACGGCGAGGGAGATTCGACCCGAAGTAGAGAATTTCAATCAACATCTCTTCTTGCAAGAAGGCGAAATGGCTTCGTGGCTTCACTATCCAATCGACCACGATGATCCTCCCTTGGATCAGAGCTTCTGCGCCGATTTCTTCTATTCGCCGCCGATGACGGTTAACAATAACAGTGCCATGCAAAGCCCTGTCCGTGCGTCTCAACTAACGGAGCTCCGGCAGCCGCCGATGTCGGTAGCTCCTAAACCTCCGATTCCGCCGCCGAGGAGGCCGGAACAGGTGCAGCCAAAGACGCCGAACTTCGCGCAATTGTGGAAGCACAATGCGAGAGACGAGCCAGGACCGTCCTCGAATTCGAGGACCGCCGCGAGGGAATCAACGATGGTTGATTCGTGCGACACGCCTGCGGGGGCGGCGGCGAGAGTTTTGGAGACTGACAGAAGCTCGGCTGAGCCAACGGAAGAAGCAGCCGGCGTAGCAGCGCCTTCGACGACGTGTGACGAACCGGGGGGTTCGAGTAGCAGCGGTGAACCGGTTCAAAAGGTTGCGGCGCTGGACCGGAAGAGGAAGGGAAGGGAAGCGGAGGAATGGGAGTGTCAGAGCGAGGATGTTGACTTTGAATCTGTGGAACCAAAAAAACAAGTTCGTGGATCAACATCTACAAAGAAATCTCGTGCTGCCGAGGTCCATAATCTCTCTGAGAGGAGGCGTCGTGATCGGATTAATGAGAAAATGAGAGCTCTGCAAGAACTTATACCTCGTTGTAATAAGTCTGACAAAGCTACAATGCTGGATGAAGCAATTGAATACTTGAAGTCGCTGCAGTTACAAGTGCAGATGATGTCCATGGGGTGTGGCATGGTACCTATGATGTTTCCTGGAATCCAGCAGTATATGCCATCAATTGGAATGGGGATGGGAATGGACATGGGAATGAACAGACCAGTAATGCCATTTCCCAATATGTTACCAGGTTCCGCTTTGCCAGCAGCAACTGCAGCAGCCCTTTTGGGACCAAGGTTCGCTATGCCTCCCTTCCACATGCTGCATGTTCCTGCACCTGATTCATCTAGGATGCAAGCAACTAATCAGTCAAATAATAATATGCTCACTTCTGTTGGTACATCTGATCCAAATCATGCACGTATCCCAAACTTCACTGATTCTTATCAACAATACCTTGGTCCCCACCAAATGCAGTTTCAATTAATGCAGAATCAGGCAATGAACCAACCTAATGCTAGCAAGCCAAGTACCAGTAGGGGACCTGAGAATCCAGAAGACCATTAG 1512 0.5093 MNHCVPDFETMDDDQEHLIPMPSGLHPRAKKPSIADDDIMELLWQNGQVVMQSQNQRPLRKPPQARDSGDAGPSTAREIRPEVENFNQHLFLQEGEMASWLHYPIDHDDPPLDQSFCADFFYSPPMTVNNNSAMQSPVRASQLTELRQPPMSVAPKPPIPPPRRPEQVQPKTPNFAQLWKHNARDEPGPSSNSRTAARESTMVDSCDTPAGAAARVLETDRSSAEPTEEAAGVAAPSTTCDEPGGSSSSGEPVQKVAALDRKRKGREAEEWECQSEDVDFESVEPKKQVRGSTSTKKSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKATMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPSIGMGMGMDMGMNRPVMPFPNMLPGSALPAATAAALLGPRFAMPPFHMLHVPAPDSSRMQATNQSNNNMLTSVGTSDPNHARIPNFTDSYQQYLGPHQMQFQLMQNQAMNQPNASKPSTSRGPENPEDH* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03188 503 MobiDBLite consensus disorder prediction 144 307 - -
Rops8g03188 503 MobiDBLite consensus disorder prediction 256 271 - -
Rops8g03188 503 MobiDBLite consensus disorder prediction 151 168 - -
Rops8g03188 503 MobiDBLite consensus disorder prediction 186 202 - -
Rops8g03188 503 Pfam Helix-loop-helix DNA-binding domain 303 349 IPR011598 GO:0046983
Rops8g03188 503 SMART finulus 305 354 IPR011598 GO:0046983
Rops8g03188 503 MobiDBLite consensus disorder prediction 52 76 - -
Rops8g03188 503 MobiDBLite consensus disorder prediction 482 503 - -
Rops8g03188 503 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 299 348 IPR011598 GO:0046983
Rops8g03188 503 CDD bHLH_AtPIF_like 299 362 IPR047265 -
Rops8g03188 503 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 297 365 IPR036638 GO:0046983
Rops8g03188 503 Gene3D - 294 357 IPR036638 GO:0046983
Rops8g03188 503 FunFam Basic helix-loop-helix transcription factor 294 357 - -
Rops8g03188 503 PANTHER TRANSCRIPTION FACTOR PIF3 29 130 IPR044273 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03188 Rops-Chr8 70015802 70022168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03188 1 354 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 42.105 2.17e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Rops8g03188 HLH 2.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03188 - - gmx:100797225 654.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03188 8 70015802 70022168 Rops8g03188 8 70015802 70022168 ECH
Rops8g03188 8 70015802 70022168 Rops6g01153 6 26234436 26240521 PCT