Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03187 ATGCAAGCTCGTGAGTTAACAGCACTTGTGGTTGATGATGACATAATTGTCCGAAAGATTCATCAAAAGATGTTGGATAGTGTTGGAGTGAAAAATCTAGTTGTGGAAAATGGCAAAAAAGCCATAGACATTCACCGCTCTGGACAAAGTTTTGACCTAATTCTCATGGACATGGACATGCCCGTTATGAATGGTATCGAGACAACAAAAGAACTTCGATCAATGGGGATTCATAGCATGATTGTTGGTGTATCAGCACGTTCAATGGAAGCAGATATACGAGAATTTATGGAAGCAGGACTGGATGATTATCTAGAGAAGCCCTTGACCATTGCTAAGCTTACTTCCATCATTCACAAGATCAATAGAATTTAA 375 0.392 MQARELTALVVDDDIIVRKIHQKMLDSVGVKNLVVENGKKAIDIHRSGQSFDLILMDMDMPVMNGIETTKELRSMGIHSMIVGVSARSMEADIREFMEAGLDDYLEKPLTIAKLTSIIHKINRI* 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03187 124 CDD REC_hyHK_CKI1_RcsC-like 9 118 - -
Rops8g03187 124 ProSiteProfiles Response regulatory domain profile. 7 122 IPR001789 GO:0000160
Rops8g03187 124 Gene3D - 1 124 - -
Rops8g03187 124 Pfam Response regulator receiver domain 9 118 IPR001789 GO:0000160
Rops8g03187 124 SUPERFAMILY CheY-like 5 122 IPR011006 -
Rops8g03187 124 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 122 - -
Rops8g03187 124 SMART REC_2 6 118 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03187 Rops-Chr8 69973770 69974309 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03187 6 118 Response Regulator Gene Family AT3G04280 46.957 6.36e-30 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops8g03187 Response_reg 2.9e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03187 - - gmx:100794931 169.474