Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03177 ATGGCTGCCGCCGCCAATCCTGTAGTTGGGTCCCATATTTGGGTGGAGGATCCTGATGTAGCTTGGATAGATGGTGAGGTGTTGGAGGTTAGTGGACAAGAAATCAGAGTCCTTTGCGCTTCAGGGAAGACGGTTGTTGTTAAAGCTTCCAGTATTTATCATAAAGATACTGAAGTACCACCAAGTGGAGTGGATGATATGACAAAGCTTGCGTACCTGCATGAACCTGGAGTCCTAGATAATCTGAGATCAAGATATGATATCAATGAAATTTATACTTACACCGGGAATATATTGATTGCTGTGAACCCTTTTATAAAGCTTCCTCATTTATACGATAGCCATATGATGGCACAATATAAAGGAGCAGCTTTTGGTGAATTAAGTCCACATCCTTTCGCTGTTGCAGATGCAGCATATAGGCTTATGATTAATGAGGGAATCAGTCAGTCAATATTGGTTAGTGGTGAAAGTGGGGCTGGTAAAACAGAAAGTACTAAGTTACTCATGCGGTATCTTGCTTACATGGGAGGGAGAGCTGCTGCTGAAGGTAGAACTGTTGAGCAAAAAGTCCTGGAGTCCAATCCTGTTCTGGAAGCCTTTGGCAATGCAAAGACTGTTAGGAACAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAATTTGATCAAAGGGGAACAATTTCAGGCGCTGCTATCAGAACTTATCTGTTGGAAAGGTCACGTGTTTGCCAGGTGTCAGATCCAGAGAGGAATTATCATTGTTTCTACATGCTCTGTGCTGCACCTCCAGAGGATGTTAAGAAGTACAAATTAGGACATCCAAGAACATTTCATTATCTGAATCAATCAAATTGCTATGAGTTGGAAGGGGTTGATGAATCTAAAGAATATAGTGCTACAAGGAGAGCAATGGATGTTGTTGGAATAAGTTCTGAGGAGCAGGATGCAATATTTCGAGTTGTTGCTGCAATTTTGCATCTTGGGAACGTTGAATTTGTGAAAGGGGAGGAGATGGATTCATCTGTGCCCAAAGATGAAAAATCTCGGTTCCATCTACAGACTGCAGCTGAGCTTTTCGTGTGTGATGCAAAGGCACTTGAAGATTCTCTTTGCAAGCGTGTAATTGTTACTCGCGATGAAACAATTACAAAATGGCTGGATCCAGGAGCTGCTGCACTCAGCCGAGATGCTTTGGCTAAGATTGTATACACAAGATTGTTTGACTGGTTGGTGGATAAAATAAATAATTCCATTGGTCAAGACCCCGAGTCAAAATCCTTAATTGGTGTGCTGGATATTTACGGTTTTGAGAGTTTCAAGACTAACAGTTTCGAGCAATTTTGTATTAATTTGACAAATGAAAAGCTTCAGCAACATTTTAATCAGCATGTTTTCAAAATGGAGCAAGAAGAATACAACAAAGAAGAAATTGATTGGAGTTACATTGAATTTGTGGACAATCAAGATATTCTGGATCTCATTGAAAAGAAACCTGGTGGCATTATTGCTCTTCTGGATGAAGCTTGTATGTTTCCTAGATCAACACATGAAACCTTTGCTCAAAAACTGTATCAGACCTTCAAAAACCATAAAAGATTTAGCAAGCCCAAATTATCACGCAGTGACTTCACAATTTGCCATTATGCTGGTGATGTCACTTATCAAACTGAATTTTTCCTTGACAAGAACAAAGATTATGTTGTTGCAGAGCACCAGTCACTTCTTTATGCTTCCAAATGCCCCTTCGTATCAGGCTTGTTTCCCCCTTCACCTGAGGAATCTTCCAAACAATCAAAGTTCTCTTCAATAGGTTCCCGATTTAAGCAACAATTGCAAGCTTTACTTGAAATTCTCAGTGCCACTGAGCCACACTACATTCGATGTGTAAAACCCAATAATCTTCTTAAGCCAGCAATTTTCGAGAATAAAAATGTATTGCTGCAACTGCGATGTGGGGGAGTTATGGAGGCGATTAGGATTAGCTGTGCTGGGTATCCCACTAGAAAAACCTTTGACGAATTTGTGGATCGATTTGGCCTTCTTGCACCCGATGCATTGGACGGAAGTTTGGATGAGGTCACTGCTTGCAAGGAGATCCTAAAAAATGTTGGACTTGAAGGCTATCAGATCGGTAAAACAAAGGTGTTTCTTAGAGCTGGTCAAATGGCAGAACTAGATTCCCGTAGAAGTGAAATATTGGGAAAGTCAGCAAGCACTATTCAGAGGAAAGTTCGTTCCTATTTGGCCCGCCAAAGTTTCATCTCACTTCGTTTGTCGGCTATGCAAATCCAAGCTGCATGCAGAGGACAACTTGCTAGGCAAGTTTACGAGGGAATGCGGCAGGAGGCCTCTAGTCTGCTGATTCAAAGGTACATCCGCATGCATATTGCTAGGAAGGCATACAAAGAATTGTATACATCTGCTGTCGCTATCCAGACTGGTATGAGGGTGATGGCTGCTCGTTGTGAGCTACACTTTAGAAGGCGAACTAGAGCAGCAACTGTCCTTCAGAGCCACTGCAGGAAATACTTGGCGCAACTTCATTTCACGAAATTAAAGAAAGCAACAATTACAACACAATGTGCATGGAGAGGAAAAGTTGCTCGGCGAGAATTGCGGAAGCTCAAGATGGCTGCAAGAGAAACAGGAGCTCTCCAAGCTGCCAAAAATAAGCTTGAAAAGCAAGTTGAAGACCTTACATTAAGGTTACAGCTGGAAAAACGTTTGAGGGTGGACATGGAAGAAGCAAAAGTAAAGGAAAATGAAAGATTACAGTCAGCTTTGCAAGAGATGCAACTTCAGTTTAAAGAAACTAAATTACTTCTTGAAAAGGAGCGAGAGGCTACAAAAAGAGTGGAGGAGGAGAGAGTGCCTATCATACAGGAGGTTCCAGTTGTTGACCATGCTTTGTTGGAGAAGCTCAGTGGTGAAAATGAGAAACTCAAGAGCTTGGTGAGTTCACTGGAAAAGAAAATTGATGAAACAGAAAAAAGGTATGAAGAGGCAAACAGAATTAGTGAAGAAAGGCTGAAGCAAGCTTTGGATGCAGAGTCAAAAGTAATCCAGTTGAAGACTGCTATGCAAAGGCTTGAAGAGAAATTCACAGACATGGAATCTGCAAACCATATTCTTCAGAAACAATCTTTGCTTAACTCGTCTGTGAAAACAATAGCAGAGCACCTCTCTACCCCTGTAGCTGAGAAGTTGGAAAATGGTCACCACGAGGCTGAAGAACAGAAAGCTGTTGATACATGTGTTACACCTGTGAAACTATTTGGTGCAGAGTCCGACTCTAAATTGAGGAGATCTTACATTGAACGACAACATGAGAGTGTTGATTCACTTATCAACTGTGTTATGAAAAATATTGGCTTCAATCATGGAAAGCCTATTGCTGCATTTACCATTTATAAATGTCTTCTCCACTGGAAATCATTTGAAGCTGAAAGAACTAGTGTCTTTGATCGCCTTGTCCAGCTGATTGGTTCTGCAATTGAGAATCAAGATGACAATGATCTTATGGCCTATTGGCTGTCAAATATGTCTGCATTGTTGCTTTTACTTGAACAACACCTGAAATCTGGGAGTCCAACAAATGCAACCCCAGTTAGAAAACCACCTAATCCAACATCCCTCTTTGGAAGAATGACTATGGGAAAATTGCAGGGTTTTCTTTCATCCCCCTCTTCTGCCAACCTTGCTGCTGCCCCTCCATCAGAGGTTGTACGCAAGGTAGAGGCTAAATACCCTGCTTTGCTTTTCAAGCAGCAGCTCACAGCCTATTTGGAGAAAATATATGGCATCATTCGGGATAACTTGAAGAAGGAGTTAACATCGGTTCTTGGATTATGTATCCAGGCACCAAGAACATCAAAGGTAGTGTTACGATCTAGCCGATCCTATGGTAAAGATTCCCCCATGGTTCACTGGCAGACTATTATTGAATCCCTCAACACCTTCCTCTGTACACTGAAAGAGAACTTTGTGCCTCCAGTTCTTATCCAAAAGATCTTCAATCAAACATTCTCTTATATTAACGTGCAACTCTTCAACAGTCTTCTTCTTCGTCGTGATTGTTGCACATTCAGCAATGGGGAATATGTGAAAGCTGGATTAGCGGAATTGGAGCTGTGGTGCTGCCAAGCAAAGGAGGGGTATGCAGGATCGTCTTGGGACGAGCTCAAGCACATAAGGCAGGCTGTTGGATTCTTGGTTATTCATCAGAAGTACAGGATTTCCTATGATGAAATCATTAATGATTTATGCCCTGTACTGAGTGTCCAGCAGCTGTATAGAATATGTACACTTTACTGGGATGGTAACTACAATACTAGAAGTGTATCACCAGATGTCCTTTCTAGCATGAGGATGCTTATGGCTGAGGACTCCAATAATGCTCAAAGTGATTCTTTCTTGTTGGATGACGAATCCAGCATCCCCTTCTCAGTTGATGACCTCTCTACATCACTGCAAGATAAGGACTTCTCAGACATGAAACCAGCAGAAGAGCTTCTTATGAATCCATCCTTCCAATTTTTAAATGAGTAG 4554 0.4155 MAAAANPVVGSHIWVEDPDVAWIDGEVLEVSGQEIRVLCASGKTVVVKASSIYHKDTEVPPSGVDDMTKLAYLHEPGVLDNLRSRYDINEIYTYTGNILIAVNPFIKLPHLYDSHMMAQYKGAAFGELSPHPFAVADAAYRLMINEGISQSILVSGESGAGKTESTKLLMRYLAYMGGRAAAEGRTVEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQRGTISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDVKKYKLGHPRTFHYLNQSNCYELEGVDESKEYSATRRAMDVVGISSEEQDAIFRVVAAILHLGNVEFVKGEEMDSSVPKDEKSRFHLQTAAELFVCDAKALEDSLCKRVIVTRDETITKWLDPGAAALSRDALAKIVYTRLFDWLVDKINNSIGQDPESKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYNKEEIDWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLSRSDFTICHYAGDVTYQTEFFLDKNKDYVVAEHQSLLYASKCPFVSGLFPPSPEESSKQSKFSSIGSRFKQQLQALLEILSATEPHYIRCVKPNNLLKPAIFENKNVLLQLRCGGVMEAIRISCAGYPTRKTFDEFVDRFGLLAPDALDGSLDEVTACKEILKNVGLEGYQIGKTKVFLRAGQMAELDSRRSEILGKSASTIQRKVRSYLARQSFISLRLSAMQIQAACRGQLARQVYEGMRQEASSLLIQRYIRMHIARKAYKELYTSAVAIQTGMRVMAARCELHFRRRTRAATVLQSHCRKYLAQLHFTKLKKATITTQCAWRGKVARRELRKLKMAARETGALQAAKNKLEKQVEDLTLRLQLEKRLRVDMEEAKVKENERLQSALQEMQLQFKETKLLLEKEREATKRVEEERVPIIQEVPVVDHALLEKLSGENEKLKSLVSSLEKKIDETEKRYEEANRISEERLKQALDAESKVIQLKTAMQRLEEKFTDMESANHILQKQSLLNSSVKTIAEHLSTPVAEKLENGHHEAEEQKAVDTCVTPVKLFGAESDSKLRRSYIERQHESVDSLINCVMKNIGFNHGKPIAAFTIYKCLLHWKSFEAERTSVFDRLVQLIGSAIENQDDNDLMAYWLSNMSALLLLLEQHLKSGSPTNATPVRKPPNPTSLFGRMTMGKLQGFLSSPSSANLAAAPPSEVVRKVEAKYPALLFKQQLTAYLEKIYGIIRDNLKKELTSVLGLCIQAPRTSKVVLRSSRSYGKDSPMVHWQTIIESLNTFLCTLKENFVPPVLIQKIFNQTFSYINVQLFNSLLLRRDCCTFSNGEYVKAGLAELELWCCQAKEGYAGSSWDELKHIRQAVGFLVIHQKYRISYDEIINDLCPVLSVQQLYRICTLYWDGNYNTRSVSPDVLSSMRMLMAEDSNNAQSDSFLLDDESSIPFSVDDLSTSLQDKDFSDMKPAEELLMNPSFQFLNE* 1518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03177 1517 Pfam DIL domain 1339 1441 IPR002710 -
Rops8g03177 1517 Coils Coil 973 1049 - -
Rops8g03177 1517 CDD MYSc_Myo11 76 720 IPR036018 -
Rops8g03177 1517 ProSiteProfiles IQ motif profile. 758 787 IPR000048 GO:0005515
Rops8g03177 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 787 883 IPR027417 -
Rops8g03177 1517 ProSiteProfiles IQ motif profile. 831 860 IPR000048 GO:0005515
Rops8g03177 1517 SMART iq_5 853 875 IPR000048 GO:0005515
Rops8g03177 1517 SMART iq_5 782 804 IPR000048 GO:0005515
Rops8g03177 1517 SMART iq_5 757 779 IPR000048 GO:0005515
Rops8g03177 1517 SMART iq_5 830 852 IPR000048 GO:0005515
Rops8g03177 1517 SMART iq_5 734 756 IPR000048 GO:0005515
Rops8g03177 1517 CDD MyosinXI_CBD 1108 1486 IPR037975 GO:0007015
Rops8g03177 1517 ProSiteProfiles IQ motif profile. 737 764 IPR000048 GO:0005515
Rops8g03177 1517 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Rops8g03177 1517 Gene3D - 735 784 - -
Rops8g03177 1517 Gene3D - 785 832 - -
Rops8g03177 1517 Gene3D - 833 882 - -
Rops8g03177 1517 Gene3D - 439 623 - -
Rops8g03177 1517 Pfam Myosin N-terminal SH3-like domain 10 52 IPR004009 GO:0003774|GO:0005524|GO:0016459
Rops8g03177 1517 FunFam unconventional myosin-Va 833 881 - -
Rops8g03177 1517 Gene3D - 666 733 - -
Rops8g03177 1517 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops8g03177 1517 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops8g03177 1517 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops8g03177 1517 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops8g03177 1517 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops8g03177 1517 ProSiteProfiles IQ motif profile. 854 883 IPR000048 GO:0005515
Rops8g03177 1517 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Rops8g03177 1517 FunFam Myosin 2 312 430 - -
Rops8g03177 1517 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops8g03177 1517 ProSiteProfiles Dilute domain profile. 1157 1463 IPR002710 -
Rops8g03177 1517 SMART MYSc_2a 56 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops8g03177 1517 PANTHER MYOSIN 58 1451 - -
Rops8g03177 1517 FunFam Myosin XI D 735 784 - -
Rops8g03177 1517 ProSiteProfiles IQ motif profile. 783 812 IPR000048 GO:0005515
Rops8g03177 1517 Pfam IQ calmodulin-binding motif 832 851 IPR000048 GO:0005515
Rops8g03177 1517 Pfam IQ calmodulin-binding motif 856 875 IPR000048 GO:0005515
Rops8g03177 1517 Pfam IQ calmodulin-binding motif 786 804 IPR000048 GO:0005515
Rops8g03177 1517 Pfam IQ calmodulin-binding motif 761 778 IPR000048 GO:0005515
Rops8g03177 1517 Pfam IQ calmodulin-binding motif 737 755 IPR000048 GO:0005515
Rops8g03177 1517 Gene3D Kinesin motor domain 65 662 IPR036961 -
Rops8g03177 1517 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 785 IPR027417 -
Rops8g03177 1517 Coils Coil 877 950 - -
Rops8g03177 1517 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Rops8g03177 1517 FunFam Myosin heavy chain 252 307 - -
Rops8g03177 1517 Gene3D - 252 310 - -
Rops8g03177 1517 FunFam Class V myosin 439 581 - -
Rops8g03177 1517 SMART DIL_2 1338 1445 IPR002710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03177 Rops-Chr8 69826772 69847253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03177 1 1516 Myosins gene family AT5G43900 74.030 0.0 2316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03177 K10357 - gmx:100795648 2678.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03177 8 69826772 69847253 Rops8g03177 8 69826772 69847253 ECH
Rops8g03177 8 69826772 69847253 Rops6g01164 6 26388467 26406819 PCT