Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops8g03167 | ATGGCAACTCAAGGTCAAGTCATTACCTGCAAAGCTGCGGTGGCCTGGGAACCCAACAAGCCGTTGACCATCGAAGACGTTCAGGTAGCTCCGCCGCAAGCCGGCGAGGTCCGAATCCAAATCCTCTACACTGCTCTCTGTCACACCGATGCTTATACTTGGAGTGGCAAGGATCCAGAAGGTCTCTTCCCATGTATTCTTGGACATGAAGCTGCTGGGATTGTGGAAAGTGTCGGAGAAGGTGTTACTGAAGTTCAGCCTGGTGATCATGTCATCCCTTGTTACCAGGCTGAGTGTAAAGAATGCAAGTTTTGCAAATCAGGCAAGACAAATCTCTGTGGCAAGGTTCGTGCCGCCACTGGTGTTGGGATCATGCTAAGTGATCGCAAGAGTCGTTTCTCTATTAATGGAAAGACTATCTATCATTTCATGGGAACATCCACTTTTAGTCAATACACTGTTGTTCATGATGTTAGTGTAGCTAAGATTGATCCAAGAGCTCCTTTGGAGAAAGTTTGTCTTCTTGGATGTGGTGTTCCAACTGGCCTTGGAGCTGTTTGGAACACTGCAAAAGTGGAGCCAGGGTCAATTGTTGCTATTTTTGGCCTTGGAACTGTTGGACTTGCTGTTGCAGAGGGTGCAAAAACTGCTGGTGCATCCCGAATTATTGGCATAGATATCGACAGCAATAAGTTTGATATAGCAAAAAAATTTGGAGTCACTGAGTTTATTAATCCAAAGGAACATGAGAAACCAATTCAGCAGGTCATCATTGATCTCACAGATGGTGGAGTTGATTATAGCTTTGAGTGCATTGGAAATGTCTCCGTGATGAGATCTGCTTTGGAATGCTGCCACAAGGGCTGGGGGACATCAGTTATCGTGGGTGTTGCAGCATCAGGGCAGGAAATATCAACTCGCCCGTTTCAGTTGGTGTCTGGCCGTGTCTGGAAAGGAACAGCTTTTGGTGGCTTTAAGAGCAGGTCACAAGTGCCTTGGCTTGTAGACAAGTACTTGAAGAAGGAAATCAAGGTTGATGAATACATCACCCATAATTTGACTCTCGCGGAGATCAACAAGGCTTTTGATCTTATGCATGAAGGGAAATGTCTTCGTTGTGTGCTTACAGTGCATGCATGA | 1140 | 0.4588 | MATQGQVITCKAAVAWEPNKPLTIEDVQVAPPQAGEVRIQILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECKECKFCKSGKTNLCGKVRAATGVGIMLSDRKSRFSINGKTIYHFMGTSTFSQYTVVHDVSVAKIDPRAPLEKVCLLGCGVPTGLGAVWNTAKVEPGSIVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSNKFDIAKKFGVTEFINPKEHEKPIQQVIIDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAASGQEISTRPFQLVSGRVWKGTAFGGFKSRSQVPWLVDKYLKKEIKVDEYITHNLTLAEINKAFDLMHEGKCLRCVLTVHA* | 380 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops8g03167 | 379 | FunFam | S-(hydroxymethyl)glutathione dehydrogenase | 182 | 320 | - | - | |
Rops8g03167 | 379 | CDD | alcohol_DH_class_III | 8 | 376 | IPR014183 | GO:0006069|GO:0008270|GO:0051903 | |
Rops8g03167 | 379 | PANTHER | ALCOHOL DEHYDROGENASE | 5 | 375 | - | - | |
Rops8g03167 | 379 | FunFam | S-(hydroxymethyl)glutathione dehydrogenase | 13 | 200 | - | - | |
Rops8g03167 | 379 | NCBIfam | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | 10 | 376 | IPR014183 | GO:0006069|GO:0008270|GO:0051903 | |
Rops8g03167 | 379 | SUPERFAMILY | GroES-like | 326 | 376 | IPR011032 | - | |
Rops8g03167 | 379 | Pfam | Alcohol dehydrogenase GroES-like domain | 35 | 162 | IPR013154 | - | |
Rops8g03167 | 379 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 168 | 341 | IPR036291 | - | |
Rops8g03167 | 379 | Gene3D | - | 182 | 320 | - | - | |
Rops8g03167 | 379 | Pfam | Zinc-binding dehydrogenase | 206 | 330 | IPR013149 | - | |
Rops8g03167 | 379 | ProSitePatterns | Zinc-containing alcohol dehydrogenases signature. | 68 | 82 | IPR002328 | GO:0008270|GO:0016491 | |
Rops8g03167 | 379 | Gene3D | - | 13 | 372 | - | - | |
Rops8g03167 | 379 | SUPERFAMILY | GroES-like | 3 | 197 | IPR011032 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops8g03167 | Rops-Chr8 | 69705496 | 69708854 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops8g03167 | 10 | 331 | Monolignol Biosynthesis Gene Families | AT1G72680 | 25.994 | 5.02e-15 | 73.9 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops8g03167 | K00121 | - | cave:132165797 | 736.873 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops8g03167 | 8 | 69705496 | 69708854 | Rops8g03167 | 8 | 69705496 | 69708854 | ECH | |
Rops8g03167 | 8 | 69705496 | 69708854 | Rops6g01176 | 6 | 26503869 | 26506805 | PCT |