Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03164 ATGGCTTCTTCATTTACTTGCTCCGCCGCCGACCTCCACCCTCTTCTTGGCACCGGAGCCAATGCCACTGCAGCTGCTGAATACATCTGTGGAGGCTTTGAAGCCATTTCAAACAAGTTTGTTGACACTTCTTATGCAGTGGACAATACTTACCTTCTCTTCTCTGCCTATCTTGTCTTTGCCATGCAACTTGGTTTTGCTATGCTATGTGCTGGTTCTGTCCGTGCCAAGAACACCATGAACATTATGCTTACCAATGTGCTTGATGCTGCCACTGGTGGCATCTTCTTTTACATCTTTGGCTTTGCCTTTGCTTTTGGTGCCCCTTCCAATGGTTTTATTGGGAAACACTTCTTTGGCCTAGATAAATTCCCTTCTCAGTCTTTTGACTATGGATACTTCCTCTATCAATGGGCTTTTGCCATTGCAGCTGCTGGGATAACAAGTGGTTCCATTGCTGAGAGGACACAATTTGTGGCTTATTTGATTTACTCATCTTTCTTGACTGGTTTGGTGTATCCCATTGTGGCTCATTGGTTTTGGTCTGCTGATGGTTGGGGTAGCCCTGCAAGGACTGAGAATCTCTTGTTTGGATCTGGGGTCATTGATTTTGCTGGTTCTGGTGTTGTTCACTTGGTTGGAGCTGTTGCTGGCTTCTGGGGTGCCTTAATTGAAGGACCTCGTATTGGAAGATTTGATCATGATGGAAAACCTGTGGCAATGAGAGGACATAGTGGTACCTTGGTTGTGTTGGGCACATTCTTGTTGTGGTTTGGTTGGTATGGTTTCAACCCTGGCTCATTTCTTAACATATTGAAGACTTATGGTGACAGTGGTTCTTACTATGGACAATGGAGTGCTATTGGGAGGACTGCAGTGACTACAACTCTTGCTGGATGCTCAGCAGCACTCACTACCCTCTTTGGCAAACGTATCCAAACTGGGCATTGGAATGTCACTGATGTTTGCAATGGTTTGCTTGGTGGGTTTGCTGCAATCACCTCAGGGTGTGCTGTCGTGGACCCTTGGGCTGCAATCGTATGTGGGTTTGTGGCTGCTTGGGTTCTCATTGGATGCAACATCCTGGCAGAGAAATTCAAGTATGATGACCCTCTTGAGGCTGCACAACTTCATGGGGGTTGTGGTACATGGGGGATCATTTTCACTGCATTGTTTGCTAAGAAAGAGTATGTGAATGAAGTCTACTCAGGGTTCCCTGATAGGCCTCATGGACTGTTTATGGGAGGGGGTGCAAGACTCTTGGCAGCACATGTTGTGCAGATTTTGGCTATTTTAGCTTGGGTGAGTGTCACAATGGGAGCAGTGTTCTTTGTGCTACATAAACTGAAACTACTGAGGACATCACCTGAGGAGGAGATGGCTGGATTGGATTTAACCAGCCATGGTGGTTTGGCATATGAGTATCATGAAGAGCTCCAACCTGCCAAGAAACATGCATCGGAAACAACTGTTTGA 1476 0.4627 MASSFTCSAADLHPLLGTGANATAAAEYICGGFEAISNKFVDTSYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFFYIFGFAFAFGAPSNGFIGKHFFGLDKFPSQSFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVAHWFWSADGWGSPARTENLLFGSGVIDFAGSGVVHLVGAVAGFWGALIEGPRIGRFDHDGKPVAMRGHSGTLVVLGTFLLWFGWYGFNPGSFLNILKTYGDSGSYYGQWSAIGRTAVTTTLAGCSAALTTLFGKRIQTGHWNVTDVCNGLLGGFAAITSGCAVVDPWAAIVCGFVAAWVLIGCNILAEKFKYDDPLEAAQLHGGCGTWGIIFTALFAKKEYVNEVYSGFPDRPHGLFMGGGARLLAAHVVQILAILAWVSVTMGAVFFVLHKLKLLRTSPEEEMAGLDLTSHGGLAYEYHEELQPAKKHASETTV* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03164 491 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519|GO:0016020|GO:0072488
Rops8g03164 491 Gene3D Ammonium transporter AmtB like domains 29 489 IPR029020 -
Rops8g03164 491 PANTHER AMMONIUM TRANSPORTER 29 476 - -
Rops8g03164 491 SUPERFAMILY Ammonium transporter 45 453 - -
Rops8g03164 491 Pfam Ammonium Transporter Family 51 473 IPR024041 GO:0008519|GO:0016020|GO:0072488
Rops8g03164 491 FunFam Ammonium transporter 29 488 - -
Rops8g03164 491 NCBIfam ammonium transporter 48 473 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03164 Rops-Chr8 69664272 69665747 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03164 1 478 Inorganic Solute Cotransporters AT4G28700 78.675 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03164 K03320 - cave:132166278 842.417