Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03154 ATGCTGGGGTTTCCAAAGATTGGAGCTTGTGTAGCAGCTACACATCATCTTGATCACAAGCGATTTCAGAGAACAATCAAGATTCTAACTCCAGATGGTGAAATGCCCTTCTTTGCAAAACGTTTCAATGACATCACTCGCTTAGTCTCTCACGGATCGTCCAATACCCTTTTGTGTTTGATCCTTGGATTGCCCTTGTTGGAACTTGTGGCAATCATTGCCAACTTGTCTCTTCTTCTTATGTTTCTTGTTGTTGTACTGGCAAAGAAGATGCTAGTGCGTGTAAGGGGAAGAGTTCGATTTGGTAAGGACAATACGGTGGACAATGCTGCCTCAATTCGTGCTAGTTTTGATGGAGAAACACGTGATGTTCGAATTGGGACATGGTTCAAGTTGACAGTGTTGTCTTGTTTCTATGTTCTGTTGGTGCAAGTTTTGGTGTTGGGATTTGATGGGGTTACTTTGATTAGGAAAGAGGCTAAGGGGAAGATGCCTGTGGATTTGTCTCTTCTTTTTGTGCCACTTGTTCAGGGTTTAGCTTGGGTTGTGATAAGCTTCTCGGCTTTGCATTGCAAATTCAAGGTGTCTGACAAGTTTCCAATTTTGTTGAGAGTTTCATGGATTGTGTTGTTTGTTGTTTGTTTGTGTACTTTATATGTTGATGGGAGAGGGTTTTGGATGGAAGGTTCCAAACACCTATGTTCTCATATTGTGGCAAATTTTGCTGTTACCCCTGCTCTTGGCTTCTTGTGTATTGTTGCAATTAGGGGTATTACTGGCATACAAGTATGTAGGAACTCTGAGGTTCAACAGCCATTAATTATTGAAGAAGAAGAAGAACCGGGGTGTCTCAAGGTTACTCCTTATAATGATGCTGGACTTTTTAGCTTGGCCACTTTGGCTTGGCTGAACCCACTTCTTTCCATTGGTGCAAAGAGACCACTTGAGCTAAAGGACATTCCCCTTGTTGCTCCAAAAGATAGAGCCAAAACCAATTATGAGATTTTGAATTCTAATTGGGAGAGATTGAAGGCTGAAAATCCATCTAGTCAGCCTTCATTAGCTTGGGCAATTCTCCATTCATTTTGGAAGGAGGCAGCTTGTAATGCCATTTTTGCTGGTGTCACTACTCTTGTCTCATATGTAGGTCCTTACATGATAAGTTACTTTGTCGATTATTTGGGTGGTAAAGAGACTTTCCCAAATGAGGGGTATGTCCTTGCAGGGATATTCTTTGCGGCAAAGCTTGTGGAGACTTTTACAACTAGGCAGTGGTATCTAGGAGTGGACATCTTGGGTATGCATGTTAGGTCTGCTTTAACAGCAATGGTATATCGAAAGGGGCTCAGGCTATCAAGCTTGGCCAAGCAAAGTCATACAAGTGGTGAAATTGTTAACTACATGGCTATTGATGTTCAGAGGGTAGGGGATTTCTCTTGGTATCTTCATGACATATGGATGCTTCCTCTGCAGATTGTTCTTGCCCTTGCAATTTTGTATAAGAATGTTGGAATCGCTTCGATTGCAACACTGATTGCTACAATCATTTCCATTGTTGTCACTGTTCCTGTGGCTAGGATCCAAGAAGATTATCAAGACAAACTAATGGCCTCTAAGGATGAAAGGATGAGAAAAACATCTGAATGCCTGAGGAATATGAGGATTGTTAAGCTGCAAGCTTGGGAGGACAGATATCGAATAAAATTGGAGGAAATGCGTGGAGTAGAGTTCAAGTGGCTTCGGAAAGCCCTCTACTCTCAGGCTTTCATAACTTTCATATTCTGGAGCTCCCCTATATTTGTTTCAGCGGTCACTTTTGCTACTTCCATATTGTTGGGTGGTGAGCTGACTGCAGGTGGTGTACTTTCTGCTTTAGCTACTTTCAGGATCCTCCAAGAACCTTTGAGGAATTTTCCGGACTTGGTATCAACAATGGCTCAGACAAAAGTTTCTCTTGATCGAATATCTGGTTTCCTGCTGGATGAAGAATTGCAGGAAGATGCAACTATTATCTTGCCACCAGGCATTTCTAACATTGCTATAGAAATTAAGGATGGTGTCTTCTGTTGGGACCCTTCTCCATCTTCTAGGCCTACTCTATCAGGGATAAATGTGAAATTTGAAAGAGGGATGCGTGTAGCTGTTTGTGGTATGGTTGGTTCAGGGAAATCAAGTTTCCTTTCTTGCATCCTTGGAGAGATTCCTAAGCTTTCTGGTGAAGTCAGAGTGTGTGGCTCTGCTGCTTATGTCTCCCAATCAGCATGGATACAGTCAGGAAATATAGAAGAAAATATCCTCTTCGGAAGCCCTAAGGACAAAACAAAGTACAAGAATGTTCTTCATGCTTGTTCACTGAAAAAGGACCTAGAACTTTTCTCACATGGAGATCAGACAATTATTGGTGATAGAGGTATAAACCTGAGTGGTGGCCAGAAGCAGCGGGTTCAGCTTGCCCGGGCACTCTACCAAGATGCTGATATTTATATCCTTGATGATCCCTTCAGTGCAGTTGATGCCCACACTGGATCAGAATTGTTTAGGGAGTACATATTGACAGCACTAGCAGATAAAACAGTCATTTTTGTGACCCATCAAGTGGAATTTCTTCCTGCTGCGGATTTGATACTGGTTCTTAAAGAAGGTTGCATCATACAGGCAGGAAAGTATGATGATCTTTTACAAGCAGGAACAGATTTCAAAACTCTAGTTTCAGCTCACCATGAAGCCATAGAGGCTATGGATATCCCTACTCACTCCTCTGAAGATTCAGATGAAAATTTATCATTGGAAACAGCTGTTATGACCAGTAAGAAATCCATTTGTTCTGCGAACGATATTGACAGTTTAGCAAAGGAAGTGCAAGAGGGATCATCGGCTCCAGATCAAAAAGCAATCAAGGACAAGAAGAAAGCAAAACGATCGAGGAAAAAACAGCTTGTCCAGGAAGAGGAGAGGGTTAGAGGTAGAGTCAGCATGAAGGTGTATCTTTCATACATGGCAGCAGCATATAAAGGTTTATTGATTCCACTTATAATCATTGCACAAACATTATTTCAGTTCCTTCAGATTGCTAGTAATTGGTGGATGGCCTGGGCTAACCCTCAAACAGAAGGAGACCTGCCCAAAGTAACTCCCACGATACTTCTACTTGTTTACATGGCCCTTGCTTTTGGCAGCTCATGTTTTATATTTGTAAGGGCTGTTTTGGTGGCTACATTTGGTCTTGCAGCTGCACAGAAGCTATTTTTGAAGATGCTTAGGAGTGTTTTCCATGCACCGATGTCTTTCTTTGATTCTACACCAGCTGGAAGGATCTTGAATCGGGTATCAATTGATCAAAGTGTTGTGGATCTTGACATTCCTTTTAGACTTGGTGGGTTTGCTTCAACAACGATACAGCTTATTGGTATTGTGGGTGTAATGACAGATGTTACATGGCAAGTTTTGCTCGTAGTCATCCCAATGGCCATTGCTTGTTTGTGGATGCAGAAATACTACATGGCTTCCTCAAGGGAACTGGTCCGAATTGTAAGCATCCAGAAGTCACCAATTATACATCTTTTTGGTGAATCAATTGCTGGAGCATCTACCATCAGAGGTTTTGGACAAGAAAAAAGGTTCATGAAGCGGAACCTCTATCTTCTTGATTGTTTTGCACGACCATTCTTCTGCAGTCTTGCTGCTATTGAGTGGCTCTGCCTGCGCATGGAGTTACTCTCAACCTTTGTATTTGCTTTCTGCATGGTATTACTTGTGAGCTTTCCCCAAGGAAGTATTGACCCTAGCATGGCTGGACTTGCTGTGACATATGGCCTGAATTTAAATGCACGCCTATCACGATGGATACTCAGCTTTTGCAAACTCGAAAATAAAATTATATCTATTGAAAGAATTTATCAGTACAGCCAAATTCCTAGTGAAGCACCAGCAATTATCGAAGATTCTCGCCCTCCATCCTCATGGCCAGAAAATGGGACAATCGAGATAATTGATTTAAAAGTCCGTTACAAGGAGAATCTTCCTTTGGTGCTTCATGGAGTATCCTGCACCTTTCCTGGTGGGAAGAAGATAGGAATAGTTGGACGCACTGGCAGTGGCAAATCTACTTTGATTCAAGCTTTATTTCGATTAATTGAACCAGCAAGTGGAAGTATCTTCATAGACAACATTAATATTTCAGAGATTGGTCTTCATGACCTTCGAAGCCATCTCAGTATCATACCACAAGATCCAACCTTATTTGAAGGGACCATTCGAGGCAATCTTGATCCTCTTGAGGAGCACTCAGATAAAGAGATCTGGGAGGCACTAGATAAGTCTCAGCTTGGAGAGATTATCCGTGAGAAAGGACAAATGCTTGATACACCAGTTCTAGAAAATGGAGATAATTGGAGTGTAGGACAGCGGCAACTTGTTTCTCTGGGCCGAGCTCTACTGAAGCAGTCAAAAATACTTGTACTTGATGAAGCAACAGCATCAGTTGATACTGCGACTGATAATCTTATCCAGAAGGTTATTCGAAATGAGTTCAAAGACTGCACTGTGTGCACCATTGCACATCGTATTCCTACTGTCATCGATAGTGATCTAGTTCTGGTGCTCAGTGATGGTCGAGTTGCAGAGTTTGACACTCCATCAAGACTATTAGAGGACAAGTCATCCATGTTTCTAAAGTTGGTGACTGAATATTCATCACGGTCAAATGGTATACCAGATTTTTAG 4722 0.4193 MLGFPKIGACVAATHHLDHKRFQRTIKILTPDGEMPFFAKRFNDITRLVSHGSSNTLLCLILGLPLLELVAIIANLSLLLMFLVVVLAKKMLVRVRGRVRFGKDNTVDNAASIRASFDGETRDVRIGTWFKLTVLSCFYVLLVQVLVLGFDGVTLIRKEAKGKMPVDLSLLFVPLVQGLAWVVISFSALHCKFKVSDKFPILLRVSWIVLFVVCLCTLYVDGRGFWMEGSKHLCSHIVANFAVTPALGFLCIVAIRGITGIQVCRNSEVQQPLIIEEEEEPGCLKVTPYNDAGLFSLATLAWLNPLLSIGAKRPLELKDIPLVAPKDRAKTNYEILNSNWERLKAENPSSQPSLAWAILHSFWKEAACNAIFAGVTTLVSYVGPYMISYFVDYLGGKETFPNEGYVLAGIFFAAKLVETFTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSLAKQSHTSGEIVNYMAIDVQRVGDFSWYLHDIWMLPLQIVLALAILYKNVGIASIATLIATIISIVVTVPVARIQEDYQDKLMASKDERMRKTSECLRNMRIVKLQAWEDRYRIKLEEMRGVEFKWLRKALYSQAFITFIFWSSPIFVSAVTFATSILLGGELTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRISGFLLDEELQEDATIILPPGISNIAIEIKDGVFCWDPSPSSRPTLSGINVKFERGMRVAVCGMVGSGKSSFLSCILGEIPKLSGEVRVCGSAAYVSQSAWIQSGNIEENILFGSPKDKTKYKNVLHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYILDDPFSAVDAHTGSELFREYILTALADKTVIFVTHQVEFLPAADLILVLKEGCIIQAGKYDDLLQAGTDFKTLVSAHHEAIEAMDIPTHSSEDSDENLSLETAVMTSKKSICSANDIDSLAKEVQEGSSAPDQKAIKDKKKAKRSRKKQLVQEEERVRGRVSMKVYLSYMAAAYKGLLIPLIIIAQTLFQFLQIASNWWMAWANPQTEGDLPKVTPTILLLVYMALAFGSSCFIFVRAVLVATFGLAAAQKLFLKMLRSVFHAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLIGIVGVMTDVTWQVLLVVIPMAIACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLAAIEWLCLRMELLSTFVFAFCMVLLVSFPQGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPAIIEDSRPPSSWPENGTIEIIDLKVRYKENLPLVLHGVSCTFPGGKKIGIVGRTGSGKSTLIQALFRLIEPASGSIFIDNINISEIGLHDLRSHLSIIPQDPTLFEGTIRGNLDPLEEHSDKEIWEALDKSQLGEIIREKGQMLDTPVLENGDNWSVGQRQLVSLGRALLKQSKILVLDEATASVDTATDNLIQKVIRNEFKDCTVCTIAHRIPTVIDSDLVLVLSDGRVAEFDTPSRLLEDKSSMFLKLVTEYSSRSNGIPDF* 1574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03154 1573 FunFam ABC transporter C family member 10 350 663 - -
Rops8g03154 1573 Pfam ABC transporter 700 834 IPR003439 GO:0005524
Rops8g03154 1573 Gene3D ABC transporter type 1, transmembrane domain 969 1308 IPR036640 GO:0005524|GO:0016020
Rops8g03154 1573 Gene3D ABC transporter type 1, transmembrane domain 338 664 IPR036640 GO:0005524|GO:0016020
Rops8g03154 1573 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 677 904 IPR027417 -
Rops8g03154 1573 MobiDBLite consensus disorder prediction 952 978 - -
Rops8g03154 1573 Pfam ABC transporter transmembrane region 371 635 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops8g03154 1573 Pfam ABC transporter transmembrane region 1010 1252 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops8g03154 1573 SUPERFAMILY ABC transporter transmembrane region 356 666 IPR036640 GO:0005524|GO:0016020
Rops8g03154 1573 CDD ABC_6TM_ABCC_D2 1008 1302 IPR044726 GO:0140359
Rops8g03154 1573 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1327 1561 IPR003439 GO:0005524
Rops8g03154 1573 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 290 1564 - -
Rops8g03154 1573 SUPERFAMILY ABC transporter transmembrane region 1007 1307 IPR036640 GO:0005524|GO:0016020
Rops8g03154 1573 ProSitePatterns ABC transporters family signature. 807 821 IPR017871 GO:0005524|GO:0016887
Rops8g03154 1573 Coils Coil 326 346 - -
Rops8g03154 1573 Pfam ABC transporter 1344 1492 IPR003439 GO:0005524
Rops8g03154 1573 CDD ABCC_MRP_domain2 1325 1545 - -
Rops8g03154 1573 FunFam ABC transporter C family member 5 666 914 - -
Rops8g03154 1573 FunFam ABC transporter C family member 3 1310 1562 - -
Rops8g03154 1573 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1318 1557 IPR027417 -
Rops8g03154 1573 CDD ABC_6TM_ABCC_D1 368 655 IPR044746 GO:0140359
Rops8g03154 1573 CDD ABCC_MRP_domain1 681 881 - -
Rops8g03154 1573 Gene3D - 674 925 IPR027417 -
Rops8g03154 1573 FunFam ABC transporter C family member 5 971 1308 - -
Rops8g03154 1573 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 681 905 IPR003439 GO:0005524
Rops8g03154 1573 SMART AAA_5 709 890 IPR003593 GO:0016887
Rops8g03154 1573 SMART AAA_5 1353 1538 IPR003593 GO:0016887
Rops8g03154 1573 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 370 647 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops8g03154 1573 Gene3D - 1310 1563 IPR027417 -
Rops8g03154 1573 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1010 1280 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03154 Rops-Chr8 69445528 69457819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03154 691 898 Calmodulin-binding Proteins AT2G36910 30.396 4.62e-18 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03154 - - gmx:100790550 2649.77