Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03144 ATGGCACCCAATCCAAAAGTAGTAGCTGCCTATCGTGCAATGGCAAATCTTGGGATTCATGAATCAAAAGTGAAACCGGTATTAAAGAAACTACTTAAATTGTATGATAAAAACTGGGAACTTATTGAAGAAGAGAATTATAGGGCTCTTGCTGATGCTATATTTGAGGAGGATGAAAATAAGGTTCCGGAGTCGGACCAGGAAAAGAAAAGCAATAAAGGGGGCGTGGATGATGAAGAAGCTCATATGCATGATGAGCCGTTGCGACCTTTGAAGAGGTTGCGTTTAAGAGGCCAAGAGGTTCAATCTTCACGCCTTCTGAATAGCTGTGGCCCCAGCTCAGCTGCCTTTCCATTGAAAACGCCTAAATTAGAAGATGACGTGATACCTGAAAGTGGTTCCAGACTGCAGCCTCAAAGTGCAGCAGTATTATCTGATGGAAATGCAAGGATAGAAGCGCATCAAGCTCAACCACGAGATGCCATTATTGACAAGGGAAAGCAACCTATGTCACCTCAAGATACTCCCAGAGGGAGAAGATTTATATCCGACAGAACTCCCCCTGCAGTATCATTTAAAGAACCAACTGCTGAACCAGGAGCCTCTCCGTTGTCAAAAAACAAAATGCCTTATCCTTACACTTTTATCAAGCCCAAGGATGAGCCTATTGATGAAATACCAGATTACGAGATTCCCATTGCAGTGATTCTTCCTGAACCATCAAGTGGAAGAGACTCTTCAATGAAGAATGATGCAGCTAGAAAGCAAGATGGCCATGACACTGTGGCATCACAGTGCAGAGATGAAGATGTTGAAGGTGAAGGTATTCTTCCTTCCTCAAATGAAGAAGCAACTTCTAATGTAGAGCTAGCCTCATCATCTATGGGAGAGGAAGGATCCACAAAGGTAATACCAACTGTTAATCTTTCAAAGGAATCTGGGGAAAATGGACTGGTTGTCCAAGGAAATGAAGATTCGGTCATACATTCTTGCACTTCAAATGGATCAATCAGTGTCAAGTCTTCTCCTGCCTTGGTTGCACCTCAAGTTCCCATTCCTCTACCCTGTCCGAGTGGTCCGGATGATGCTGTACTAGTTTCCAAGAAGGCTGGAATGAATGGTTTCTTAGAAAGTGATGGCGGGAAGGAGCTCGGGGGTCCTTTATCTCCAAACTCATGTAATTTAGTGAATGCTCCAAAGCATCGGCTTACAACTGATGATATAAGGGCTGCTTGCGATGTTAATGACCTAACAAAGGGAGAAGAAAGAGTGAAAATTTCATGGGTGAATGACACTACTAATGATTTCCCACCATCCTTTCACTACATACCCCGAAACCTTGTGTTCAAAGATGCGTACGTGAAGATTTCTCTATCTCGTATTGGGAATGAGGATTGTTGCTCTACTTGTATGGGCGATTGTGTCTTGTCATCTAAACCATGTTCTTGTGCAAATAAAACTGGGGGTGAATTTGCTTACACTGCACAAGGCCTACTAAAGGAAGAGTTCTTGGAAGAGTGTATTGCCATCAGTCGCGACCCTCAAAATTATTTCTACTGCAAAGACTGCCCACTTGAAAGATCAAAGAATGATGATTGTTTAGAACCATGTAAGGGGCACTTGAAGAGGAAGTTTATTAAAGAGTGCTGGAGCAAATGTGGCTGTGGGAAACATTGTGGCAATCGGGTTGTCCAGCGTGGAATAACTTGCAAGTTGCAGGTGTTTTTAACTTCAGATGGAAAAGGGTGGGGCCTTCGTACCTTAGAGGATCTCCCAAAAGGTGCATTTGTATGTGAGTTTGTTGGAGAAATTCTAACTGTCAAAGAGTTGCATGAGAGGAACTTGAAATATCCCAAAAATGGGAAATATACGTACCCAGTTTTGTTGGATGCTGATTGGGATTCAGGAGTTGTAAAGGATAATGAAGCTCTTTGCTTATATGCAGCATCATATGGAAATGCTGCTAGGTTTATTAATCACAGATGTTTAGATGCAAACTTGATTGAGATCCCAGTTGAAGTTGAGGGCCCAGCTCATCACTACTATCATTTTGCCTTTTTCACATCCAGAAAAATAGCAGCACAGGAAGAGCTAACTTGGGATTACGGCATCAACTTTGATGACCATGATCAGCCAGTTGAGCTGTTCCAGTGCAGATGTGGCAGTAAATTCTGCAGGAATATGAAGCGATCAAATAGAAGCATTAGATCGTCAATTGCAGGATGA 2226 0.4259 MAPNPKVVAAYRAMANLGIHESKVKPVLKKLLKLYDKNWELIEEENYRALADAIFEEDENKVPESDQEKKSNKGGVDDEEAHMHDEPLRPLKRLRLRGQEVQSSRLLNSCGPSSAAFPLKTPKLEDDVIPESGSRLQPQSAAVLSDGNARIEAHQAQPRDAIIDKGKQPMSPQDTPRGRRFISDRTPPAVSFKEPTAEPGASPLSKNKMPYPYTFIKPKDEPIDEIPDYEIPIAVILPEPSSGRDSSMKNDAARKQDGHDTVASQCRDEDVEGEGILPSSNEEATSNVELASSSMGEEGSTKVIPTVNLSKESGENGLVVQGNEDSVIHSCTSNGSISVKSSPALVAPQVPIPLPCPSGPDDAVLVSKKAGMNGFLESDGGKELGGPLSPNSCNLVNAPKHRLTTDDIRAACDVNDLTKGEERVKISWVNDTTNDFPPSFHYIPRNLVFKDAYVKISLSRIGNEDCCSTCMGDCVLSSKPCSCANKTGGEFAYTAQGLLKEEFLEECIAISRDPQNYFYCKDCPLERSKNDDCLEPCKGHLKRKFIKECWSKCGCGKHCGNRVVQRGITCKLQVFLTSDGKGWGLRTLEDLPKGAFVCEFVGEILTVKELHERNLKYPKNGKYTYPVLLDADWDSGVVKDNEALCLYAASYGNAARFINHRCLDANLIEIPVEVEGPAHHYYHFAFFTSRKIAAQEELTWDYGINFDDHDQPVELFQCRCGSKFCRNMKRSNRSIRSSIAG* 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03144 741 FunFam SET-domain containing protein lysine methyltransferase family protein 417 728 - -
Rops8g03144 741 Gene3D SET domain 417 728 IPR046341 -
Rops8g03144 741 Gene3D - 1 60 IPR043017 -
Rops8g03144 741 ProSiteProfiles SET domain profile. 570 703 IPR001214 GO:0005515
Rops8g03144 741 SMART preset_2 414 554 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops8g03144 741 Pfam Ubiquitin-binding WIYLD domain 6 60 IPR018848 -
Rops8g03144 741 Pfam SET domain 582 703 IPR001214 GO:0005515
Rops8g03144 741 SUPERFAMILY SET domain 424 726 IPR046341 -
Rops8g03144 741 ProSiteProfiles Pre-SET domain profile. 466 567 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops8g03144 741 MobiDBLite consensus disorder prediction 164 207 - -
Rops8g03144 741 MobiDBLite consensus disorder prediction 248 274 - -
Rops8g03144 741 MobiDBLite consensus disorder prediction 238 285 - -
Rops8g03144 741 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 736 - -
Rops8g03144 741 SMART set_7 570 709 IPR001214 GO:0005515
Rops8g03144 741 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 740 IPR025776 -
Rops8g03144 741 Pfam Pre-SET motif 418 562 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Rops8g03144 741 CDD SET_SETDB-like 438 703 - -
Rops8g03144 741 MobiDBLite consensus disorder prediction 58 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03144 Rops-Chr8 69325436 69333026 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03144 400 726 Su(var)3-9 homologs AT1G73100 30.814 4.43e-32 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Rops8g03144 Pre-SET 1.1e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03144 - - gmx:100809678 1128.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03144 8 69325436 69333026 Rops8g03144 8 69325436 69333026 ECH
Rops6g01191 6 26716238 26723257 Rops8g03144 8 69325436 69333026 PCT