Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03140 ATGACAGTTAAAGAACAAAAAGCAAGCTGTGTAGTATTTTGCTGGGAAATAATGGAAGCACGCCCTGCTTTCTCTATTGAAAGATCAAGTGCAAAGCAGCTCAATAACATAGGGATGTCCGGAGCGCTTCCTTCATCGTTGCCTGTCCTTCCAATGCCTCCAGAAGAGACATACCCCAAATTATCTGATTCGCAGCCGGCTTTTGTGGAAAAGGAGCTCAAAACAAGACCTTTTACTCATTCAAGTCATGCAATTTCCAGCGGAGCAGTTGGGCATATGTTTTCATCTTCCCCTGGATATTCAACTGATCTTCATCACTCATCCCTTTCACCTCATGGAAAACACGCTAGAAATGCTCATTTTATTTCACAGTCATTGAGTAACATGGCTTCATTGCCATTATCTTTTTCTTCAAACAATGGACCAATACCTTCTACAACATCAACCCATTATTCCACAGGAAACAGTGCTTCCTGGAATACAGATTCCTTGCCTAGCTTTCTTGATTTCTCTGCGAATAACTCCATTGATAATAGTCAAGTAGAGAGCAGTGCCTGCAATCTTATGGCAGCTGAGGAGTATTCTAAGCGAAATGATTGGCAGGAGTGGGCTGACCAGCTAATCAGTGATGATGATACTTTGACTTCTAGTTGGAATGATCTTCTTGCAGACAACATTCAAGATCTTGAACCAAAGGTGGTGGATCAGGTTCCAAAATCATCTTCACAGTCAGGACACCAATCCCAATGCCATCAACAACTTCCTGCATCATCTGGAGAAAATCGTGTTGGTGCTGCCCCATCTTCCTCAGCAAATTCTGCACCTGCCAAGCCACGGATGCGTTGGACACCTGAGCTTCATGAGGCGTTTGTGGAGGCTGTCAACCAACTTGGTGGGAGTGAAAGAGCTACCCCTAAGGGTGTGCTGAAGCACATGAAAGTTGAAGGATTAACTATTTATCATGTTAAAAGCCACTTACAGAAATACAGGACAGCTAGATATAGACCAGAGTCATCTGAAGGAGCTGCAGAGAAAAAACTAAGCCCCATTGACGAGATGTCATCTCTTGATTTGAAAACTGGTATTGAGATCACTGAAGCTCTGCGACTGCAGATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAGATTCAAAGAAATCTACAGTTACGAATAGAAGAACAAGGAAGGTACCTCCAGATGATGTTTGAGAAGCAATGCAAATCTGGCGTTGAACCATTCAAGGCATCATCATCTGCCATTGAGAGTCCATCTGGAGTGTCTTCTGATGCCATGAAAGATTCTCCTGCCAAAACCGATTTGGAAGCATCCAAAGTGGACCATTGCAGGTCAGGACCTGATCAAGCTAATGGCAGTACCACAGCTGAGGAAAGCTCTCTGGAAGTGGGGGGCAAGAAGGATGCTCCTGAAAGTCAAGCTTCTGAGAACCCTAAGGAACATGGTAATGAAGATAGTGCTCATCCCTTGAAGCGTCCAAGGACAGATGAGCGAAGCAGTCATGAAGGCAATGGGAGGCCTCACGTCGTAGCCAGAAAAAGGAAAAAAGATACATGCTAA 1578 0.4442 MTVKEQKASCVVFCWEIMEARPAFSIERSSAKQLNNIGMSGALPSSLPVLPMPPEETYPKLSDSQPAFVEKELKTRPFTHSSHAISSGAVGHMFSSSPGYSTDLHHSSLSPHGKHARNAHFISQSLSNMASLPLSFSSNNGPIPSTTSTHYSTGNSASWNTDSLPSFLDFSANNSIDNSQVESSACNLMAAEEYSKRNDWQEWADQLISDDDTLTSSWNDLLADNIQDLEPKVVDQVPKSSSQSGHQSQCHQQLPASSGENRVGAAPSSSANSAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKHMKVEGLTIYHVKSHLQKYRTARYRPESSEGAAEKKLSPIDEMSSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGVEPFKASSSAIESPSGVSSDAMKDSPAKTDLEASKVDHCRSGPDQANGSTTAEESSLEVGGKKDAPESQASENPKEHGNEDSAHPLKRPRTDERSSHEGNGRPHVVARKRKKDTC* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03140 525 MobiDBLite consensus disorder prediction 415 525 - -
Rops8g03140 525 Gene3D - 276 335 - -
Rops8g03140 525 MobiDBLite consensus disorder prediction 435 449 - -
Rops8g03140 525 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 274 334 IPR017930 -
Rops8g03140 525 MobiDBLite consensus disorder prediction 236 276 - -
Rops8g03140 525 Pfam MYB-CC type transfactor, LHEQLE motif 362 409 IPR025756 -
Rops8g03140 525 MobiDBLite consensus disorder prediction 478 513 - -
Rops8g03140 525 NCBIfam myb-like DNA-binding domain, SHAQKYF class 277 331 IPR006447 GO:0003677
Rops8g03140 525 FunFam Myb family transcription factor 276 334 - -
Rops8g03140 525 SUPERFAMILY Homeodomain-like 275 331 IPR009057 -
Rops8g03140 525 Coils Coil 365 385 - -
Rops8g03140 525 Pfam Myb-like DNA-binding domain 279 330 IPR001005 -
Rops8g03140 525 MobiDBLite consensus disorder prediction 234 279 - -
Rops8g03140 525 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 242 503 IPR044848 GO:0003700
Rops8g03140 525 MobiDBLite consensus disorder prediction 415 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03140 Rops-Chr8 69300805 69308409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03140 18 455 G2-like Transcription Factor Family AT4G28610 47.875 2.36e-106 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops8g03140 Myb_DNA-binding 2.4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03140 - - gmx:100810560 789.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03140 8 69300805 69308409 Rops8g03140 8 69300805 69308409 ECH