Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03138 ATGACAATTTTTCAAAAGGGTCATGCTCTTCTTTTTCATGTACTAGTTATATCTTTGCTTCCATTGAAAATCACAGCATCACCAAGAACAGAAGCAGAAGCCCTTATCAAATGGAAAAACAGTCTAGCCCCTCCTCTTCCTCCTTCTCTCAACTCATGGTCACTCACCAACCTTGGCAACCTTTGCACTTGGGATGCTGTTGTTTGTGACAACACCAATACAACTGTCTTAGAGATAAACTTGTCTGGTGCCAGTCTCACTGGGACACTCACTGGCTTGGGTTTTGCTTCCCTCCCCAACCTCACACACCTCAACATCAATGACAACAATTTTGGTGGATCAATACCATCAGCAATTGGCAACCTCTCCAAGCTCACTTTCTTGGACTTGGGAAACAACTTTTTTGAAGACACACTGCCTTCTGGGATAGGCCAGCTAAGAGAACTTCAATATCTGAATTTTTACTCGAACAATCTCAATGGTATCATACCCTATCAGCTCACAAATCTCCCCAAGGTAAGGTACCTGGACCTTGGATCAAACTACTTTATATCTCCTCCTGACTGGTCCAAATATTCAGGCATGCCTTCGTTAACTTACCTTGGTTTGGATCTCAATGATTTCACTGCTGAGTTCCCAAGTTTCATATTGGAGTGCCAGAACTTAACATACCTTGATCTCTCTCAGAACAATTGGAAAGGCACAATACCAGAATCCTTGTATAGCAATTTGGGCAGGCTTGAATACCTCAACCTCACCAGCTCTGGACTAGAAGGAAAACTGTCATCCAACTTGTCCTTGCTCTCTAATCTCAAGGAACTTCATATAGGTAATAACATGTTTAGTGGTCCTATTCCCACAGAGATAGGATTGATATTAGGACTTGAAGTTCTTGAATTGAACAATATTTCAGCCCACGGGGAAATTCCTTCTTCCTTAGGCCAACTTAGGGAGCTAAAGTATCTTGATCTCCGTGATAACTTTTTGAACTCTAAAATCCCTTCTGAGCTTGGCCTATGCACAAATCTAACCTTCCTGAGTTTAGCAACAAATAATCTGACTGGTCCCTTGCCTTTGTCATTAGCTAATTTGGCCAAACTATCAGAACTGGGATTATCAGCAAATTCCTTTTCTGGTCAAATTTCTGCTTCACTGATCTCTAATTGGACTGAGTTGATCTCTCTTCAAGTCCAAAACAATCAATTGACAGGAAAGGTTCCTCCACAGATTGGCCTGTTGAAAAAAATTAATTACCTCTTTCTATACCAAAATCAGTTCTCTGGTCCCATTCCAGAAGAGATTGGAAACCTGAAGGAAATGACAGTGTTAGACCTTTCAGGAAACCACTTCTCTGGTCCAATTCCACCAACCATTTGGAATCTGAAAAACATCACTGTCCTTAATCTTTTCTTCAACAAGCTCTCTGGAACCATTCCCAAGGATATTGGAAACTTGACCTCACTGCAAATTTTTGATGTCGACAATAATAACTTGGATGGAGAGTTGCCAGAGACCATTGCTCATCTACCTGCCTTAATGAATTTTTCTGTGTTCACCAATAACTTCTCAGGCAGTATTCCCAGGGATTTTGGAAAGAATAGTCCTTCTTTGACTCATGTCTACCTTTCAAACAACACCTTCTCAGGAGAACTGCCTTCTGACTTGTGCAGTGATCTCAAGCTAGTTGTTTTGGCTGTCAATAACAACAGCTTTTCTGGGCCATTGCCTAAGTCCTTGAGAAATTGTTCATCACTAACAAGAGTAAGGCTTGATGAAAACCAGTTCACTGGAAACATCACAGAAGCATTTGGGGTTCATCCGAATCTTAGTTTTATCTCACTCAGTGGAAATCAGATTGTTGGTGAACTCTCCCCTATGTGGGGTGAATGCATCAGCTTAACTGAGATGGAAATGAGTGGAAACAAACTTTCTGGAAAAATTCCATCTGAGCTGAGTAAGTTGAGTCGATTACAATATCTAAGCTTGCATTCCAATGAATTCTCTGGCAGTATCCCACCTGAAATTGGAAATCTAGGCCTGCTCTACATGTTCAACTTGAGCAAGAACCATTTGTCAGGTGAAATTCCAAAGAGTATTGGCAAATTGGCTCAGCTTAATGATCTTGATTTATCAGATAACAACTTCATTGGAAGCATCCCTAAAGAGATCAGTAATTGCAATCGTTTACTGAGTCTCAATTTAAGCCATAATAATCTATCTGGGGAGATACCTTATGAACTTGGCAATCTGTTCTCACTCCAATACTTGTTGGACCTCAGCGGCAATTCTATTTATGGGGAAATTCCTCAAAACCTTCAAAAGCTAGGATCACTGGAGATTCTCAATGTCTCACACAACCATCTATCTGGGACAATCCCACAATCCTTTTCAAGTATGCTCAGTCTTCAATCTATCGATTTTTCTTACAACCACTTGACTGGTTTGATCCCAACAGGTGGTATTTTCCAGACAGCAACTACTGAAGCTTATGTTGGGAACTCAGGTTTGTGTGGTGAGGTAAAAGGATTAACTTGTGCCAAAATATTGTCCCAAGACAACTCTAGAGGGGTTAATAAAAAAGTTCTTCTTGGTGTTATTATACCTGTTTGCGTGTTACTATTTATTGGAATGATTGGTGTTGGAATCCTACTATTCAGAAGGCAAGCCAAACACCTTGATGAAGAGTACAAAAGCATCGAAAATAATGATCAGTCTATTGGCATGGTTTGGGGAAGAGATGGAAAATTCACATTTTCTGATCTTGTTAAGGCCACAAATGAATTCAATGACATGTACTGCATTGGAAAAGGAGGTTTTGGAAGTGTTTATAGAGCAGGATTACCAACAGGTCAAGTTGTTGCTGTTAAAAGGCTCAATATATCAGACTCCGATGACATTCCAGCAGTGAACCGCCAGAGTTTTATGAATGAGGTAAGAACACTTACAGGAGTGAGGCACCGCAATATAATAAAGCTTTATGGATTCTGTTCTAGGAGGAGACAAATGTTCTTGGTTTATGAATATGTCAACAAAGGAAGTTTGGGAAAAATGCTGTATGGAGAGGAAGGAAAATTGGAGTTAATCTGGGCTACAAGGGTGAAAATTGTGCAGGGAATAGCACATGCACTTTCCTACCTACACAGTGACTGCTCCCCAGCAATTGTGCACCGAGATGTAACATTGAATAACATATTACTGGACTCAGACTTTGTACCCCGTCTTGCAGATTTTGGCACAGCCAAGCTGCTAAGCTCTAACAATTCAACCTGGACCTCAGTTGCTGGATCCTATGGCTACATGGCTCCAGAGCTAGCACAAACTATGAGGGTGACTGACAAGTGTGATGTCTATAGTTTTGGAGTGGTGGCATTAGAGCTAATGATGGGAAAGCACCCTGGAGAACTCTTGACTACACTGTCTTCAAAAAATTCTTTGTCATCAATGGAGGATCAACAGGTGCTTCTGAAGGATGTACTAGACCAACGGCTTCCACCTCCAACTGGCCAGTTAGCTGAAGCAATAGTGTTTACAGTGACAGTAGCTTTGGCATGCACACGTGCGGCTCCAGAATCCAGACCAATGATGCGTTCTGTGGCACAAGAACTATCAGCTAATACGCAGCCTTGTCTTTCCGAGCCACTTGGCATGATAACCATAACCAAGCTTACAGGGTTCCAGAAATAG 3684 0.4131 MTIFQKGHALLFHVLVISLLPLKITASPRTEAEALIKWKNSLAPPLPPSLNSWSLTNLGNLCTWDAVVCDNTNTTVLEINLSGASLTGTLTGLGFASLPNLTHLNINDNNFGGSIPSAIGNLSKLTFLDLGNNFFEDTLPSGIGQLRELQYLNFYSNNLNGIIPYQLTNLPKVRYLDLGSNYFISPPDWSKYSGMPSLTYLGLDLNDFTAEFPSFILECQNLTYLDLSQNNWKGTIPESLYSNLGRLEYLNLTSSGLEGKLSSNLSLLSNLKELHIGNNMFSGPIPTEIGLILGLEVLELNNISAHGEIPSSLGQLRELKYLDLRDNFLNSKIPSELGLCTNLTFLSLATNNLTGPLPLSLANLAKLSELGLSANSFSGQISASLISNWTELISLQVQNNQLTGKVPPQIGLLKKINYLFLYQNQFSGPIPEEIGNLKEMTVLDLSGNHFSGPIPPTIWNLKNITVLNLFFNKLSGTIPKDIGNLTSLQIFDVDNNNLDGELPETIAHLPALMNFSVFTNNFSGSIPRDFGKNSPSLTHVYLSNNTFSGELPSDLCSDLKLVVLAVNNNSFSGPLPKSLRNCSSLTRVRLDENQFTGNITEAFGVHPNLSFISLSGNQIVGELSPMWGECISLTEMEMSGNKLSGKIPSELSKLSRLQYLSLHSNEFSGSIPPEIGNLGLLYMFNLSKNHLSGEIPKSIGKLAQLNDLDLSDNNFIGSIPKEISNCNRLLSLNLSHNNLSGEIPYELGNLFSLQYLLDLSGNSIYGEIPQNLQKLGSLEILNVSHNHLSGTIPQSFSSMLSLQSIDFSYNHLTGLIPTGGIFQTATTEAYVGNSGLCGEVKGLTCAKILSQDNSRGVNKKVLLGVIIPVCVLLFIGMIGVGILLFRRQAKHLDEEYKSIENNDQSIGMVWGRDGKFTFSDLVKATNEFNDMYCIGKGGFGSVYRAGLPTGQVVAVKRLNISDSDDIPAVNRQSFMNEVRTLTGVRHRNIIKLYGFCSRRRQMFLVYEYVNKGSLGKMLYGEEGKLELIWATRVKIVQGIAHALSYLHSDCSPAIVHRDVTLNNILLDSDFVPRLADFGTAKLLSSNNSTWTSVAGSYGYMAPELAQTMRVTDKCDVYSFGVVALELMMGKHPGELLTTLSSKNSLSSMEDQQVLLKDVLDQRLPPPTGQLAEAIVFTVTVALACTRAAPESRPMMRSVAQELSANTQPCLSEPLGMITITKLTGFQK* 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03138 1227 FunFam MDIS1-interacting receptor like kinase 2 1009 1208 - -
Rops8g03138 1227 Pfam Leucine rich repeat 124 182 IPR001611 GO:0005515
Rops8g03138 1227 ProSitePatterns Protein kinases ATP-binding region signature. 934 956 IPR017441 GO:0005524
Rops8g03138 1227 PANTHER LEUCINE RICH REPEAT KINASE 2 482 1206 - -
Rops8g03138 1227 Pfam Protein kinase domain 931 1166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g03138 1227 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 534 848 - -
Rops8g03138 1227 FunFam Leucine-rich repeat receptor protein kinase MSP1 891 1008 - -
Rops8g03138 1227 Gene3D Transferase(Phosphotransferase) domain 1 1009 1211 - -
Rops8g03138 1227 SUPERFAMILY RNI-like 520 816 - -
Rops8g03138 1227 ProSiteProfiles Protein kinase domain profile. 928 1210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g03138 1227 SUPERFAMILY Protein kinase-like (PK-like) 911 1202 IPR011009 -
Rops8g03138 1227 Pfam Leucine Rich Repeat 777 798 IPR001611 GO:0005515
Rops8g03138 1227 Pfam Leucine Rich Repeat 100 122 IPR001611 GO:0005515
Rops8g03138 1227 FunFam MDIS1-interacting receptor like kinase 2 isoform A 404 506 - -
Rops8g03138 1227 Coils Coil 882 902 - -
Rops8g03138 1227 Gene3D Phosphorylase Kinase; domain 1 889 1008 - -
Rops8g03138 1227 SUPERFAMILY RNI-like 78 403 - -
Rops8g03138 1227 FunFam MDIS1-interacting receptor like kinase 2 193 387 - -
Rops8g03138 1227 Gene3D Ribonuclease Inhibitor 28 189 IPR032675 -
Rops8g03138 1227 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Rops8g03138 1227 SMART LRR_typ_2 122 146 IPR003591 -
Rops8g03138 1227 SMART LRR_typ_2 799 824 IPR003591 -
Rops8g03138 1227 SMART LRR_typ_2 535 558 IPR003591 -
Rops8g03138 1227 SMART LRR_typ_2 702 726 IPR003591 -
Rops8g03138 1227 SMART LRR_typ_2 437 461 IPR003591 -
Rops8g03138 1227 SMART LRR_typ_2 775 798 IPR003591 -
Rops8g03138 1227 SMART LRR_typ_2 195 219 IPR003591 -
Rops8g03138 1227 SMART LRR_typ_2 654 678 IPR003591 -
Rops8g03138 1227 SMART LRR_typ_2 485 509 IPR003591 -
Rops8g03138 1227 SMART LRR_typ_2 98 121 IPR003591 -
Rops8g03138 1227 SMART LRR_typ_2 316 340 IPR003591 -
Rops8g03138 1227 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1054 1066 IPR008266 GO:0004672|GO:0006468
Rops8g03138 1227 SUPERFAMILY RNI-like 298 621 - -
Rops8g03138 1227 CDD STKc_IRAK 934 1202 - -
Rops8g03138 1227 FunFam MDIS1-interacting receptor like kinase 2 28 189 - -
Rops8g03138 1227 Gene3D Ribonuclease Inhibitor 505 846 IPR032675 -
Rops8g03138 1227 Gene3D Ribonuclease Inhibitor 190 504 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03138 Rops-Chr8 69283792 69288252 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03138 31 648 Receptor kinase-like Gene Family AT4G08850 31.935 1.48e-78 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Rops8g03138 Pkinase 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03138 - - gmx:100809137 1906.34