Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03126 ATGGATGATTCTGAAAAATCTAACAGTAAAAGTAAACTGTTGAATCCATGGATGCTCCACTTTCAGAAACTCGCTCTCGAACTCAAGTGTCCTCTCTGTTTGAGCTTGTTCAAGAGGCCGGTGTTGCTACCATGCGACCACTTGTTCTGCAATTCCTGCTTGACTGATAGCACTACCGATGACTCTGAATGTGCTGTCTGTAAGATTAAGTATGCTAAAAAAGATGTAAGGTATGTGCCATTTGTTGAAAACATGGTAGCAATCTATAGAAGCTTGGATGCCACCTTTTGTGCAAATCTGTTTCAGCAACATTCTTCTGATAATCTGAGGGTTTTGGAGCCATGTAAAACATTTCTTGATTCAACTTGTAGTAATAAAAAGACTGACAGAGTTCCACAAAAATCTCCTAATTCTGGTGAGGTTGGGGTTGGGGTTGGCAAGAGTCACAAATCCAAGATTACAGTGCATGGTAAAGCTCAGGGGTTTGAGATGTCTTGTAGGGGAGTGACTGACTTTCACAGTGCAGGGAAGCCTGATCCAATGCAATATTCCCTGATGGAAATTGGGGACCATGTGGAAATGGACATGAATCAAGTGACACAATCTGCACCAGACAGCCCTCCATTTTGTGATACCAAAGGCTCAGATAATGACTGCAGTGATCAAGACAGTGGGCATCCATTCAATCCTGAGAGATTGGAAAATTCTTCATTGAAGAGAGCAAGCATGGGAAATGGAAATTTGAAAGAAAGAATGTCTCAGTTGAGGTCTGAAAGTTCTGCCTCTGAAACTGAGGACCTTATGAGAGATTTCAAGAGGCAAAAAAATCTGACCAATGGAGATGATCATTTTCAACATAGCACTGCATATCATAACACGCTTGTGAATTCCCACTGTGATGTGGACCATAAATCTGGAAAGGACCCTAGTGCATTGTTGCCTGCAAATGCACCAAATGACTTAAATCCAAGTAAAAGTATCTGTTCATTTTGCCAATCCTCCAAAACCTCAGAGGCTACTGGGCCAATGCTGCATTATGCAAATGGGAATTTAGTTACAGGAGATGCAGTAACGCAACCAAATGTCATACCTGTGCATAGAATTTGCCTTGACTGGGCGCCACAAGTGTATTTTGTTGATGAAACTGTTAAGAATTTGAAGGCAGAAATTGCAAGAGGAGCAAAGCTTAAATGCAGCAAATGTGGTCTAAAGGGAGCTGCTCTTGGCTGCTATGTCAAATCCTGTAGAAGAACTTATCATGTCCTTTGTGCAATGGACATCTCAACTTGCCGCTGGGATCATGTGGAATTTCTCTTGCTCTGTCCTGTTCATTCTCATGTCAAATTTCCAACTGAGAAATCAAGGCGTAAAAAACAGGCATCTCAGAAGCATCCTGGTTTTTCTCATCTGCCATCTCATCATTCAAACCTGTTGGAAGCTTCACAGGATGATGGTAAAAAAATGGTTTTTTGTGGATCTGCTCTATCAAACGAAGAAAAGGTGCTATTGATAAATTTTGCAAGCAAGGTTGGTGCTACAGTGACCAAGTTTTGGACCTCGGATGTTACCCATGTGATTGCTGCAACTGATGCAAATGGAGCATGCTCTAGGACATTGAAAGTTCTCATGGCAATTCTAAATGGACAATGGATTCTAAAAATGGACTGGATAAAAGCATCCATGGAAGAGATGAATCCTGTAGAAGAAGAACCATATGAAATCAGTCTTGACAACCAAGGGTGTTATGGTGGCCCAAAAGCTGGCAGACTAAGGGCACTGGCCAACGAGCCAAAGCTATTTAGTGGCTTGAAGTTTTATTTTTCTGGGGATTATGTTTCGAGTTATAAGGAAGATCTTGAAGATTTAGTTGAAGTGGGAGGAGGTACTGTTTTGAGAAGCAAGGATGAAGTGGAAGCAAAAAGACATGAATGCAAAGTGGCTTCTTCAAATTTGCTGGTTGTTTACAATCTTGATCCCCCTCCAGGATGTAAGTTGGGTGAGGAAGTTTCAATTCTTTGGCAGAGACTGAATGAGGCAGAGGATTTAGTTGCCAATACCGGCTACCAAGTCATTGGTCACACGTGGATTCTGGAGTCAATTGCTGCATGTAAATTACAGCCTTTTGTTAGCTAA 2133 0.4163 MDDSEKSNSKSKLLNPWMLHFQKLALELKCPLCLSLFKRPVLLPCDHLFCNSCLTDSTTDDSECAVCKIKYAKKDVRYVPFVENMVAIYRSLDATFCANLFQQHSSDNLRVLEPCKTFLDSTCSNKKTDRVPQKSPNSGEVGVGVGKSHKSKITVHGKAQGFEMSCRGVTDFHSAGKPDPMQYSLMEIGDHVEMDMNQVTQSAPDSPPFCDTKGSDNDCSDQDSGHPFNPERLENSSLKRASMGNGNLKERMSQLRSESSASETEDLMRDFKRQKNLTNGDDHFQHSTAYHNTLVNSHCDVDHKSGKDPSALLPANAPNDLNPSKSICSFCQSSKTSEATGPMLHYANGNLVTGDAVTQPNVIPVHRICLDWAPQVYFVDETVKNLKAEIARGAKLKCSKCGLKGAALGCYVKSCRRTYHVLCAMDISTCRWDHVEFLLLCPVHSHVKFPTEKSRRKKQASQKHPGFSHLPSHHSNLLEASQDDGKKMVFCGSALSNEEKVLLINFASKVGATVTKFWTSDVTHVIAATDANGACSRTLKVLMAILNGQWILKMDWIKASMEEMNPVEEEPYEISLDNQGCYGGPKAGRLRALANEPKLFSGLKFYFSGDYVSSYKEDLEDLVEVGGGTVLRSKDEVEAKRHECKVASSNLLVVYNLDPPPGCKLGEEVSILWQRLNEAEDLVANTGYQVIGHTWILESIAACKLQPFVS* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03126 710 ProSiteProfiles BRCT domain profile. 595 710 IPR001357 -
Rops8g03126 710 MobiDBLite consensus disorder prediction 199 265 - -
Rops8g03126 710 MobiDBLite consensus disorder prediction 452 474 - -
Rops8g03126 710 ProSiteProfiles Extended PHD (ePHD) domain profile. 325 445 IPR034732 -
Rops8g03126 710 ProSiteProfiles Zinc finger RING-type profile. 30 68 IPR001841 -
Rops8g03126 710 SUPERFAMILY BRCT domain 599 707 IPR036420 -
Rops8g03126 710 SMART ring_2 30 67 IPR001841 -
Rops8g03126 710 CDD BRCT_Bard1_rpt1 489 563 - -
Rops8g03126 710 ProSitePatterns Zinc finger RING-type signature. 45 54 IPR017907 -
Rops8g03126 710 SUPERFAMILY RING/U-box 27 90 - -
Rops8g03126 710 Gene3D BRCT domain 485 590 IPR036420 -
Rops8g03126 710 MobiDBLite consensus disorder prediction 127 148 - -
Rops8g03126 710 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 101 IPR013083 -
Rops8g03126 710 Pfam BRCA1 C Terminus (BRCT) domain 486 560 IPR001357 -
Rops8g03126 710 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 220 708 IPR031099 GO:0006281|GO:0006974
Rops8g03126 710 CDD RING-HC_AtBARD1-like 24 77 - -
Rops8g03126 710 ProSiteProfiles BRCT domain profile. 484 574 IPR001357 -
Rops8g03126 710 Pfam BRCT domain, a BRCA1 C-terminus domain 597 707 IPR001357 -
Rops8g03126 710 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 447 IPR013083 -
Rops8g03126 710 FunFam Breast cancer type 1 susceptibility protein homolog 485 591 - -
Rops8g03126 710 FunFam Breast cancer associated RING 1 322 447 - -
Rops8g03126 710 CDD ePHD 365 444 - -
Rops8g03126 710 SUPERFAMILY BRCT domain 488 575 IPR036420 -
Rops8g03126 710 SMART BRCT_7 597 703 IPR001357 -
Rops8g03126 710 SMART BRCT_7 475 564 IPR001357 -
Rops8g03126 710 MobiDBLite consensus disorder prediction 229 261 - -
Rops8g03126 710 Pfam PHD-like zinc-binding domain 366 445 - -
Rops8g03126 710 FunFam Breast cancer associated RING 1 15 100 - -
Rops8g03126 710 Gene3D BRCT domain 597 703 IPR036420 -
Rops8g03126 710 Pfam Zinc finger, C3HC4 type (RING finger) 27 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03126 Rops-Chr8 69193151 69200034 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03126 518 631 Core DNA Replication Machinery Family AT4G02110 33.333 3.03e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03126 K10683 - gmx:100784883 1065.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03126 8 69193151 69200034 Rops8g03126 8 69193151 69200034 ECH