Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03123 ATGAAGTGCCTGTGCCCGGGGGGACCGGTAAAAGGAGCAGATGAAATGGTTCCTTCATCGGAATCTCTGGCAACAAAGGATTATTATTCATCGACAACAAGTGGACTTTCTGGCCAAGATGGACAAGTTGAGAGGAGACCAGATTCCGGCAACATAGATGAAGCCGAATCGTCCTTAAGGGAGAGTGGCATCTTGAATTATGAGGAAGCTAGAGCTTTGTTAGGAAGATATGAATACCAAGAAGGAAATATAGAAGCCGCTTTACATGTTTTTGAGGGAATAGACATACGTGCTGTGACTCCCAAGATAAAAATTATCCTTGCCAGAAGCAGACCACCACACCGTAAGAGACGTGCCCAGAATTATGCTACTCCATCAATGTCTATACATACAGCTGGGTTACTGTTAGAAGCAGTTTTCCTAAAAGCAAAATGTTTGCAGGTTCTTGGAAGGTTTAAAGAAGCTGCTGAAACATGCAAAGTTACTCTGGACATAATTGAGTCTTCATTACCTGAAGGCTTGCCTGAAAACTTTGGTGCCGAATGTAAATTACAGGAGACTTTGAGTAAGGCAGTTGAGCTACTTCCAGAATTGTGGAAACTTGCTGATTGTCCACGTGAAGTTATTTTATCTTACCGGCATGCACTCCTTCATCAATGGAATCTTGATGCACAGACCACAGCAAAAATTCAGAAAGACTTTGTTGTTTTTCTTCTATATAGTGGAGGGGAAGAAATCCCCCCAAATCTTCGTTCCCATATGGACAATTCCTTTGTACCCAGAAACAACATAGAAGAGGCTATACTTCTTTTAATGATTTTGCTAAGAAAAGTCTCTCTAAATAAAATTGAGTGGGATCCTTCAATTTTGGACCACCTTTCATTTGCTCTATCCGTTTCAGGGGATTTGACAACTTTAGCCAATCAATGGGAAGAATTACTCCCTGGTACTATCAATCGAAGAGAAAGGTACCATGCCCTTGCTCTTTGTTATTATGGAGCAGGTCAGGACTTGGTAGCACTGAATCTTCTTAGAAAATTGTTGAGTAGCAGAGAGGACCCAAAACGTGTTCCTGCTTTGTTAATGGCCTCTAAGATATGTTGTGAGAACCCTGATCTTGCAAAAGATGGGGTAAGCTTTGCTCACAGAGTGCTTGAGAACTTGGATGGAAGATGTGATCAGTTGGAAAGTCTTGCCAATTGCTTACTTGGTGTTTCACTTTCAGCATACTCAAAATTGGCTATTTCTAATTCCGAGAGGTTTGTAAGACAATCTGAGGCACTTCATTCCCTAAAAACTGCAAACAAAATGACCAGAACGAGTGACCCCCTTGTATTGTACTATTTAAGTTTAGAATGTGCAGAGCAAAGGAAGTTGGATGCCGCACTTCATTATGCTGAATGCTTCCTAAACTTGGAAGCTGGGTATAATATTAAAGGCTGGTTATTGTTAGCCCGGATATTATCTGCTCAAAAACGGTTTTTGGATGCCGAATCTATTATCAATGCTGCTTTGGACCAGACTGGAATATGGGATCAAGGAGATTTGTTGCGAACAAAAGCTAAACTGCAAATTGCGCGAGGCCAGTTAACAAGTGCCATTGAAACATATGCTCAGCTTCTTGCCATTCTTCTAGTTCAGAGAAAAACATTTGGTTCAAGAAAGAAGCTATATAAGGATTACAGAGATCATGCTAGGAAGTTGGAAGTGGAAATATGGCATGATCTTGCTTATGTATACATAAGTCTGTCACAGTGGCGTGATGCAGAGGTGTGTCTTTCGAAATCTAAGGCCATCAAACTATACTCTGCTACTAGATGTCATGTAATAGGTACAATGTACGAGTCAAAGGGCCTTTACAAAGAAGCTCTAAAAGCTTTTGGTGATGCTTTGAACATTGATCCTGGACATGTCCCTAGCTTGATCTCCACTGCTGTGGTTCTTAGAGGGCGCAGTAATCAATCAAATGCTGCTGCCAGAAGCTTTCTGATGGATGCACTACGGCATGACAGATTCAATGCTTCTGCTTGGTATAATCTTGGCATTCTTCACAAGGCTGAAGGTAGAATGTCAGAAGCTGCAGAATGTTTTCAGGCAGCAAGCTTTCTTGAAGAATCAGCACCAGTTGAACCTTTCAGATGA 2142 0.4141 MKCLCPGGPVKGADEMVPSSESLATKDYYSSTTSGLSGQDGQVERRPDSGNIDEAESSLRESGILNYEEARALLGRYEYQEGNIEAALHVFEGIDIRAVTPKIKIILARSRPPHRKRRAQNYATPSMSIHTAGLLLEAVFLKAKCLQVLGRFKEAAETCKVTLDIIESSLPEGLPENFGAECKLQETLSKAVELLPELWKLADCPREVILSYRHALLHQWNLDAQTTAKIQKDFVVFLLYSGGEEIPPNLRSHMDNSFVPRNNIEEAILLLMILLRKVSLNKIEWDPSILDHLSFALSVSGDLTTLANQWEELLPGTINRRERYHALALCYYGAGQDLVALNLLRKLLSSREDPKRVPALLMASKICCENPDLAKDGVSFAHRVLENLDGRCDQLESLANCLLGVSLSAYSKLAISNSERFVRQSEALHSLKTANKMTRTSDPLVLYYLSLECAEQRKLDAALHYAECFLNLEAGYNIKGWLLLARILSAQKRFLDAESIINAALDQTGIWDQGDLLRTKAKLQIARGQLTSAIETYAQLLAILLVQRKTFGSRKKLYKDYRDHARKLEVEIWHDLAYVYISLSQWRDAEVCLSKSKAIKLYSATRCHVIGTMYESKGLYKEALKAFGDALNIDPGHVPSLISTAVVLRGRSNQSNAAARSFLMDALRHDRFNASAWYNLGILHKAEGRMSEAAECFQAASFLEESAPVEPFR* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03123 713 SUPERFAMILY TPR-like 426 543 IPR011990 GO:0005515
Rops8g03123 713 ProSiteProfiles TPR repeat profile. 674 707 IPR019734 GO:0005515
Rops8g03123 713 SUPERFAMILY TPR-like 516 700 IPR011990 GO:0005515
Rops8g03123 713 ProSiteProfiles TPR repeat profile. 604 637 IPR019734 GO:0005515
Rops8g03123 713 MobiDBLite consensus disorder prediction 23 40 - -
Rops8g03123 713 Pfam Tetratricopeptide repeat 606 636 IPR019734 GO:0005515
Rops8g03123 713 Gene3D Tetratricopeptide repeat domain 49 406 IPR011990 GO:0005515
Rops8g03123 713 MobiDBLite consensus disorder prediction 11 57 - -
Rops8g03123 713 PANTHER PROTEIN NPG1 1 713 IPR043376 -
Rops8g03123 713 Gene3D Tetratricopeptide repeat domain 548 708 IPR011990 GO:0005515
Rops8g03123 713 Gene3D Tetratricopeptide repeat domain 415 547 IPR011990 GO:0005515
Rops8g03123 713 SMART tpr_5 570 603 IPR019734 GO:0005515
Rops8g03123 713 SMART tpr_5 674 707 IPR019734 GO:0005515
Rops8g03123 713 SMART tpr_5 136 169 IPR019734 GO:0005515
Rops8g03123 713 SMART tpr_5 478 511 IPR019734 GO:0005515
Rops8g03123 713 SMART tpr_5 604 637 IPR019734 GO:0005515
Rops8g03123 713 Pfam Tetratricopeptide repeat 676 700 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03123 Rops-Chr8 69157730 69164820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03123 1 713 Calmodulin-binding Proteins AT4G28600 56.887 0.0 772
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03123 K21843 - gmx:100784353 1119.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03123 8 69157730 69164820 Rops8g03123 8 69157730 69164820 ECH
Rops6g01198 6 26797634 26803830 Rops8g03123 8 69157730 69164820 PCT