Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03116 ATGGATCATGTAATTGGTGGGAAGTTTAAACTGGGAAGGAAGATTGGGAGTGGGTCTTTTGGGGAGCTTTACATAGCTGTTAATGTACAAACTGGAGAGGAGGTGGCTCTCAAACTGGAACCTGTGAAGACCAAACATCCACAGCTTCACTATGAATCAAAGTTGTATATGCTTCTTCAAGGAGGAACGGGGGTTCCCCACCTCAAGTGGTTTGGAGTTGAGGGAGACTACAATGTCATGGCAATTGACCTTCTTGGACCAAGCCTGGAAGATTTGTTCAATTATTGCAACCGGAAGTTAACATTGAAGACAGTATTAATGCTTGCTGATCAATTAATTAACAGAGTTGAATATATGCATTCGAGAGGTTTCCTTCACCGTGACATAAAGCCAGACAATTTTTTAATGGGCTTAGGACGTAAAGCAAACCAGGTGTATATCATTGACTATGGCCTTGCAAAAAAATATAGGGATCTTCAGACTCATAGGCACATACCATACAGGGAAAACAAGAACCTTACTGGCACAGCTCGGTATGCAAGTGTCAACACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTATGTACTCATGTACTTCTTGAGAGGAAGTCTTCCTTGGCAGGGACTGAAGGCTGGCACCAAAAAACAAAAATATGATAAAATCAGTGAGAAAAAGATGTCAACTCCCATAGAGGCGCTTTGCAAATCATATCCCTCAGAGTTTGTATCCTATTTCCACTACTGCCGATCATTGCGGTTTGAGGACAAGCCTGACTATTCATATTTAAAGAGGCTTTTTCGAGATTTATTTATTCGAGAAGGCTATCAATTTGACTATGTTTTTGACTGGACTATATTGAAGTATCCACAGATTAGTGGCAGCTCTAGAGGGCGGCATGACAGCGGCAAGGCAGCTATGAATGCAGGACCGTCTGTACAAAAGCCAGAAAAGATCTCAGTTGGGAAAGAGATTCGAGAGAAATTCTCTGGTGCTGTTGAAGCATTCTCACGGAGAAACCCAACAAGTTCTAGTCCTCGTGGTGATCACTCTAAACATAGGAGTTTCGAGGAAGTACCAGTACACAAGGATGTGTATCATGATCAAGAGAAGGGGCGCAATTCCTCTCGATATGGCAGCAGTTCGAGAAGAGCCATAATTTCATCAACTAGGCCAACTTCCTCTGGGGATCATACTGACAGCCGAACCGGGCGACTAACCTCAGGTGGTAGCCGTCCATCTACTGCACATAGAATTCAACCAATGTATGACACCAAACAACCAACTTTCACACGCACAGGATCAACTAGAGGCAATCGTGACGATCCTCTGCGGAGTTTTGAGCTCCTCTCTATCAGGAAGTAA 1383 0.4338 MDHVIGGKFKLGRKIGSGSFGELYIAVNVQTGEEVALKLEPVKTKHPQLHYESKLYMLLQGGTGVPHLKWFGVEGDYNVMAIDLLGPSLEDLFNYCNRKLTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMSTPIEALCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQISGSSRGRHDSGKAAMNAGPSVQKPEKISVGKEIREKFSGAVEAFSRRNPTSSSPRGDHSKHRSFEEVPVHKDVYHDQEKGRNSSRYGSSSRRAIISSTRPTSSGDHTDSRTGRLTSGGSRPSTAHRIQPMYDTKQPTFTRTGSTRGNRDDPLRSFELLSIRK* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03116 460 Gene3D Transferase(Phosphotransferase) domain 1 1 336 - -
Rops8g03116 460 MobiDBLite consensus disorder prediction 444 460 - -
Rops8g03116 460 CDD STKc_CK1_delta_epsilon 8 282 - -
Rops8g03116 460 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Rops8g03116 460 MobiDBLite consensus disorder prediction 325 339 - -
Rops8g03116 460 FunFam Putative Casein kinase I 1 85 - -
Rops8g03116 460 MobiDBLite consensus disorder prediction 351 380 - -
Rops8g03116 460 SMART serkin_6 9 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g03116 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Rops8g03116 460 MobiDBLite consensus disorder prediction 300 460 - -
Rops8g03116 460 MobiDBLite consensus disorder prediction 381 443 - -
Rops8g03116 460 FunFam Casein kinase 1-like protein 1 330 - -
Rops8g03116 460 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Rops8g03116 460 PANTHER CASEIN KINASE-RELATED 9 373 - -
Rops8g03116 460 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops8g03116 460 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03116 Rops-Chr8 69066992 69074351 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03116 91 281 MAP Kinase Kinase Kinase AT1G62400 28.934 9.46e-13 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Rops8g03116 Pkinase 1e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03116 K08960 - gmx:100781494 853.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03116 8 69066992 69074351 Rops8g03116 8 69066992 69074351 ECH
Rops8g03116 8 69066992 69074351 Rops6g01204 6 26880706 26889063 PCT