Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03109 ATGGGTCTCAGAGACATAGGTGCTTCACTGCCTCCTGGGTTTCGGTTTTATCCGAGTGATGAGGAATTGATCTGTCATTACCTTTACAAAAAGATCACAAATGAGGAAGTTCTGAAGGGTACCTTGGTAGAAATTGACTTGCATATATGTGAACCATGGCAGCTTCCTGAGGTGGCTAAGCTCAATGCAAATGAATGGTACTTCTTCAGCTTCAGGGACCGCAAATATGCAACTGGGTTTAGAACCAACAGGGCCACCACATCTGGGTATTGGAAAGCAACAGGGAAAGATCGTACGGTGCTTGATCCAATCACACAGCAGGTTGTAGGGATGAGGAAGACATTGGTGTTCTATAAGAATAGGGCTCCAAATGGCATCAAAACGGGATGGATCATGCATGAGTTCCGTTTGGAGATCCCACACATGCCTCCTAAGGAGGACTGGGTCTTGTGTAGAGTCTTCCACAAAAGCAAAGAAGATAACAACAGTTCCAAACTCAACACACAACTCATGTATGACACAACTGCTCCATCCCTAACTATGGCTTCATCATCTCCTACCAACCAAACCATCCCTGGTGGGTATAACAGACTTTCTTCTTTCTCTTCCTCCATGGCAACCCTTCATCATTTCAACCCCAACCAAAACAGTTCTCCCATGAATAATCTCCTTCAGTTTTGTCGAGAAACAAACACCAACAATAGCACTGTTACTCAAATTAGTTGCAAAGGTGATGATGGATATGGGTTCTTATGGGACATGGATTTGGAAGAAAATAGCCTAGAAGATGGCGTGGCTTCAAACTTGGACGCAATAAGATTCGAGGTTGATAATAATCATAATAATAATATGGTTTTACTATAA 864 0.4282 MGLRDIGASLPPGFRFYPSDEELICHYLYKKITNEEVLKGTLVEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVLDPITQQVVGMRKTLVFYKNRAPNGIKTGWIMHEFRLEIPHMPPKEDWVLCRVFHKSKEDNNSSKLNTQLMYDTTAPSLTMASSSPTNQTIPGGYNRLSSFSSSMATLHHFNPNQNSSPMNNLLQFCRETNTNNSTVTQISCKGDDGYGFLWDMDLEENSLEDGVASNLDAIRFEVDNNHNNNMVLL* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03109 287 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Rops8g03109 287 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Rops8g03109 287 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Rops8g03109 287 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 225 - -
Rops8g03109 287 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03109 Rops-Chr8 68938589 68943552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03109 6 159 NAC Transcription Factor Family AT1G56010 58.025 3.62e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops8g03109 NAM 3.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03109 - - tpra:123889826 489.574