Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03108 ATGGGCGCAGATCGACGAAGACGAAGGTGCCGCGCTAAGTGTGATACTGATCGCGCTAAGCGCGAACCACTCAGAGAACAAAATTCATTTCTTTTGATCGCGCTAAGAGCGGATGTTCTCCCGCTAAGCGTGATTTACACAGAATCAAGCCTTTTAACCGCGCTAAGCGAGAGTGTGATCGCGCTAAGTGCGGATGTTCTCGCGCTAAGCGCGACCTACACAGAATCAACCCTTTTAACCGCACTAAGCGCGAGTGTGATAGCCTTAAGCGCGGATTGTTGGGCATGTTAGGAAGAGCAGAACAGTTTGAGAATCAGCAAGTCTTCGGGTTCGGTCGGGCAAGATGGGGAGGGAAGACACAAGATACTGTCGATTTTGAATTCTGACTCTCTATGTACTTCACAAATCATTAATCACACAACCCCTCTTCTTCAATCTTCTCTACCTTTTATTTGTTGCAGAAATCTGGTTTTTGGAGAATCCCCGTGCTTTAAAATTCTGGCGACGATGGAAGCAGACAATGGAAGTAATTGTTCCAAAATCAAGAAGATGGGAAATCTTTCAGTTCCCCCTGGTTTTGCATCCCTAACATCTTTTATTTTGCAAAGGGCTGAAAAGGTTAAGAAAACCAAGAAATCTACAACCTTTCCAGCTGCATCTGAACTAGAGCCAATCTGCATGGAGACTAAACCTGAGGTGGATGACATTACTGCATATAACCAGATTTATATGCATCGGCCATGGATAGTGTTGGACCAGAGCAACCACAAACCTGAGGAATCTCACACAGAGCATCTTCCTATGGATCTCCCTTTAAATTCTCGTCGTCCTAAAGGAACCATACGTGGATGTCCAAACTGTAGTAATTGCCTGAAGATAACAGCAAGGTGGCATCCTGAGGATGCAAGAAGAGAGGTTCTGGAAGAAGCTCCCATTTTCCACCCAACAGAAGAGGAATTCAAAGACACGCTTAAATATATTGCAAGCATACGTTCCAGAGCAGAACCTTTTGGAATTTGTCGTATTGTCCCTCCTACCTGCTGGAAACCACCATGTTTACTTGAGAAAAACGACATACGGGAAAACTCTGAATTTGTTGCTCAGATTCAGCGAATTGATGGCCACCAAGTTCTGCATGCACAGCAAACTACGGTTAGCTCTCGTGAAAATACAACAACCAAGAGAAGAAGAGGCGAAAAAGTAGCTGTGGACCCTCAGGTTGGTGATAGAAGTTCCTGCGCCACAAATAGCCAGAATGTTGAAGACTGTGACTGTGATTCTGAACCTGGTCCTAAATTCAGTCTCAAAACATTTAAGAAATTTGCAGATGACTTCAAGATCCAGTACTTCAATTGCAAGGGTAAGAATAAGATTATGGGTTCTGATTTAAATTTAGCAATGCGTCAACAGCAGTGGGAGCCATCTGTGGAGAATATTGAGGGTGAATATGGACGGATTGTTCAAAATCCAACTGAAGAAATTGAGGTTCTTTGTGGTGACACTTTTGAGGCTGGAGATTTTAGCAGTGTATTTCCAACAGTTTCTGATTCTTGGTCGGCATACACTTACCCTGAACATATGAAATCTGGATGGAACTTAAATAATACGCTATCATTGTCAGGTTCTCTTCTTTCTTTTGAAAGCTCTGAAGCTTCACGTAATTTTGTCCCTCGGATTCATGTGGGAATGTGCTTTTCTCCACTCAACTGGAAAGTTGAAGAGCACGAATTGTACTCATTATGTTACATGCATTTGGGTGAACCTAAAGTGTGGTATGGCATCCCAGGAAGATTTGCTGTTAACTTTGAAACAGTTTGGAAGAAGTATCTCCCAGATATGTATGCAGGACAGCGCGACATGCATGATAATCTGGTGATGCAATTATCTTGCTCCTTATTGAAGGCAGAGGGTATACCTGTGTATCGTTGCGTCCAGTATCCTCGTGAGTTTGTTCTTGTCTTCCCTGGAGCATATCATTCGGGATTTGATTGTGGTTTCAACTGTTCTGAAGCAGTAAGTTTTGCTCCTGTTGAGTGGCTGCTTCATGGACAGAATGTCGTAGAGCGATATTCTGAACAGAGGAGAAAAACATTAATTTCATACGATAAGCTTTTACTGGGAGCAGCAAGGGAAGTTGTGAGGGCCCAATGGGAAACTGGTCTGTGTATGAAGAGCACTCCAGACAACGTAACTTGTAAAGATGCCTATCAAAGAAATGGGATCTTAACAAAAGCTTTGAATTCTCGTGTCAGGAGTGAAAGTTTGAAGAGGAAATTTTTATGCACTTCCTTGGTATCACGAAGAATGGATGAAAATTTTGATGCCACTTATAAGAGGGAATGTAGTATATGCCTGTGTGATTTACACTTGTCTGCCATAGTTTGTTCATGTTCAGATGACAAGTTTGCGTGTCTTAATCACGCAAAACAGCTTTGTTCTTGCACCTGGACCAACAAAATTTTCCTCTACCGCTATGAAATCAGTGAATTGAATGTTCTTTGTCAAGCTTTGGATGGAAAACTAAGTGCGGTCTATAAATGGGCCAAAGAGGATCTAGGATTAACTGTGCAGTCTTCCAAGAGATCAAAACAAATCACAGAAAATGTTGCCTCAAAGAGATCAAAACAAACCCCAGAAAATGTAAGTGGTTCAACCCGCTCTTCAGAAGACTTGAAGATGGAAGAACCTATATCCCAAAAAATACTGGATGCATACGCAAAGTGGAAACAACGTAAATCGCAGGTAATATCAAATGCATCAGAAAGGAAACAAAATGAAGTGGCCACCCAAGTCAAGGGGATTTCTAGTGATTTTCATTCAAAAATGAAAGCAAAAGAGAAGATGCTGGGGTGCCATTCTGCTGCTGCTGCAACAAGCATTGGTGGAGTAATCAAATCTGCTGGCATCAAAACTGATATAAAGGCACTTAAGAATAAGTTTACAAATTCAAAGAAAGTAAAGGGAGACCCAAAAGTATCTTCTTCAGTTGCAAACTCACGTTACATGTCTCTTCTACAAGATGACATGTTATTTGAAGTTTCATCTGATAGTACGAGCACTTCTACTTCTTCAGAATCTGATGATAATGCATGA 3093 0.4184 MGADRRRRRCRAKCDTDRAKREPLREQNSFLLIALRADVLPLSVIYTESSLLTALSESVIALSADVLALSATYTESTLLTALSASVIALSADCWAC*EEQNSLRISKSSGSVGQDGEGRHKILSILNSDSLCTSQIINHTTPLLQSSLPFICCRNLVFGESPCFKILATMEADNGSNCSKIKKMGNLSVPPGFASLTSFILQRAEKVKKTKKSTTFPAASELEPICMETKPEVDDITAYNQIYMHRPWIVLDQSNHKPEESHTEHLPMDLPLNSRRPKGTIRGCPNCSNCLKITARWHPEDARREVLEEAPIFHPTEEEFKDTLKYIASIRSRAEPFGICRIVPPTCWKPPCLLEKNDIRENSEFVAQIQRIDGHQVLHAQQTTVSSRENTTTKRRRGEKVAVDPQVGDRSSCATNSQNVEDCDCDSEPGPKFSLKTFKKFADDFKIQYFNCKGKNKIMGSDLNLAMRQQQWEPSVENIEGEYGRIVQNPTEEIEVLCGDTFEAGDFSSVFPTVSDSWSAYTYPEHMKSGWNLNNTLSLSGSLLSFESSEASRNFVPRIHVGMCFSPLNWKVEEHELYSLCYMHLGEPKVWYGIPGRFAVNFETVWKKYLPDMYAGQRDMHDNLVMQLSCSLLKAEGIPVYRCVQYPREFVLVFPGAYHSGFDCGFNCSEAVSFAPVEWLLHGQNVVERYSEQRRKTLISYDKLLLGAAREVVRAQWETGLCMKSTPDNVTCKDAYQRNGILTKALNSRVRSESLKRKFLCTSLVSRRMDENFDATYKRECSICLCDLHLSAIVCSCSDDKFACLNHAKQLCSCTWTNKIFLYRYEISELNVLCQALDGKLSAVYKWAKEDLGLTVQSSKRSKQITENVASKRSKQTPENVSGSTRSSEDLKMEEPISQKILDAYAKWKQRKSQVISNASERKQNEVATQVKGISSDFHSKMKAKEKMLGCHSAAAATSIGGVIKSAGIKTDIKALKNKFTNSKKVKGDPKVSSSVANSRYMSLLQDDMLFEVSSDSTSTSTSSESDDNA* 1031
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03108 1029 Pfam C5HC2 zinc finger 780 830 IPR004198 -
Rops8g03108 1029 SUPERFAMILY Clavaminate synthase-like 426 716 - -
Rops8g03108 1029 SMART JmjN_1 308 349 IPR003349 -
Rops8g03108 1029 ProSiteProfiles JmjC domain profile. 524 690 IPR003347 -
Rops8g03108 1029 MobiDBLite consensus disorder prediction 864 891 - -
Rops8g03108 1029 MobiDBLite consensus disorder prediction 864 886 - -
Rops8g03108 1029 ProSiteProfiles JmjN domain profile. 309 350 IPR003349 -
Rops8g03108 1029 SMART cupin_9 527 690 IPR003347 -
Rops8g03108 1029 Pfam jmjN domain 310 343 IPR003349 -
Rops8g03108 1029 Gene3D Cupin 294 674 - -
Rops8g03108 1029 PANTHER LYSINE-SPECIFIC DEMETHYLASE 303 945 - -
Rops8g03108 1029 Pfam JmjC domain, hydroxylase 559 673 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03108 Rops-Chr8 68916207 68932332 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03108 187 893 JUMONJI Transcription Factor Family AT1G08620 45.504 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Rops8g03108 JmjC 7.2e-32 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03108 K11446 - gmx:100804864 1179.08