Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03104 ATGCATATAGGTCAAACAGATACAACTTCAGTGAAATGTCTTATCAACAGCATTTCTCGATTCATTCATCTAGTTTCTTGCAAAACAGTGAAACCTGTGCCCCTTCAGAAGAACTGTCATAATATGGTTGGTGTGTTGAAGTGTTTGAAACCAGTGCTTGATGATGTTGTGGATTACATAATCCCTTTGGATGAAAATTCATATAGAGAATGTGAAGAATTGGATATGCGGGTCAATGAAGCTAGGGAGTTCATTGAGAAATGGGGCCCAAAGATGAGCAAGATTCACAGTGTTCTTCAAAGTGGGGGAATGTTGATAGAGTTACAGAGCGCTTCACTTAAGATTTGTCATACAATTGTTAGATCCCTAAAGTCACCTGCATCTGTTTCAATTTTGGCAAATATTCAGGACTATATGCAGGAACTTCAGTGTGTTAAGAAGGAATCAGCAATGCTCTATATAGAAGAAGCACTCAGAAATCAAAGGGATAATGTTGGACCTTACTATGAACATCTAAAGGAAATTATTGAGTTACTTAAATTTACATCAAATCAGGAGCTCCTGAATGAAAGTATTGCTGTCGAAAAAGAAAGGTTGAATGCTGAAGTCAATAAAACAAAAGGGAACTTGGATGAAATTAACCAAATTGTGAATCTTGTGTGCAATTTATGTGATTATGTGATGAAAAAGTGCCCTGAAGTCAAAAGCGGTGTCTCAATCCCACCATACTTTCGATGCCCTTTATCGTTGGAACTCATGTTGGATCCTGTTATAGTGGCTTCGGGTCAGACATATGAGAGGCAGTCCATCCAAACTTGGCTTGATCATGGGCTGACTGTGTGTCCCAAGACTCATCAGAGACTTATCCATACAAATCTCATTCCCAATTATACTGTTAAGGCTATGATAGCAAATTGGTGTGAGGAAAATAATGTCAAACTTCCTAGTAACTCTAAGCACAGTAATGCTGCCCATATTTCATTCCCCTCAGATTGTTTATTGCACCAAGATTTAGATCGTGTGTGTAGTTTTGGGTCTTCACATAGTAGCAATTCCAATTCAAAATCATCTCTTCAAACTGGAAATGCATATGAGAAGCAAAAAGGTGATGACTCTTTAAGATTAAGCGGAGAATCCAATGGATGCCAGAGTAGCGAGACAGAAAAGTTTGAGCAACAACCACCTGTACCTTCACGTAGTCACAGCAGAAGTGAATCATTTTCAAGCTCAAGTTCTAGTACTGATTATGTACTTCCAGTTTCAAAAGAGGTGTCAGGGATGTCTAATAAGCAACCAAATGTGGAGTTGTCTAGAGAAATTACTAATGGGTTTCCTGCTCCTGCATGTAAAGAATCAGGGATTTTTCCTTCATCATTATCAGGAAAGCAATTTCAAAGCCCTGGACTAAAAATTGGAAGGATGGAGAATGAAAATGAGTATAATAAGAATAATAATATTATTACTAGCCATTCAAATATTGATTCTCATTCTGTTTCCAGCTTAGGATCTGGTGAATTGACCAGCACATCTCATGTCAATAAGTTGATTGAAGACCTCCACAGTCAATCAAATGAAACACAAACTGCTGCTGCAGAAGAATTGAGGCTCCTTACCAAGCATAAGATGGAAAACCGTATCCTTGTAGGGCAATGTGGGACTATCACGCATTTACTTCCATTGCTATATTCAGACATGAAGATAACGCAAGAGCATGCTGTGACAGCTCTACTGAATTTGTCAATTAATGAAGACAACAAGGCCTTGATTATGGAAGCAGGAGCCATAGAACCACTTATCCATGTTTTGCAGACAGGAAATGATGGTGCCAAGGAGAATTCTGCTGCAGCTCTATTCAGCCTCTCTGTAATAGATAATAATAAGGCAAAGATTGGTCGTTCTGGTGCAGTTAAAGCTTTGGTGGATCTTCTAGACTCGGGAACTCTTAGGGGGAAGAAGGATGCAGTTACTGCTTTATTCAACCTATCAATATTTCATGAGAATAAAGCCCGTATAATTCAAGCTGGAGCTGTGAAGTTTCTGGTTCTGGTATTGGACCCTGCTCACGAGATGGTTGACAAGGCTGTTGCACTTTTGGCAAACCTGTCAACAATTGTGGAGGGTCGATTAGATATTGTAAGGGAAGGGAGCATCCCCTTACTGGTTGAACTTGTTGAATCAGGTTCTCAGAGGGGAAAGGAAAATGCTGCTTCCATTCTCTCGCAACTATGCCTTCATAGTCATAAGTTTTGTACCCTGGTTCTCCAAGAAGGAGCTGTACCTCCCCTGGTTGCATTATCTCAGTCTGGTACACCAAGAGCAAGGGAAAAGGCACAACAGCTTCTCAGTCATTTTCGTAATCAGCGTGAAGGAGCTCCAGGGAAAGGAAAATCACGAAGATAG 2400 0.3996 MHIGQTDTTSVKCLINSISRFIHLVSCKTVKPVPLQKNCHNMVGVLKCLKPVLDDVVDYIIPLDENSYRECEELDMRVNEAREFIEKWGPKMSKIHSVLQSGGMLIELQSASLKICHTIVRSLKSPASVSILANIQDYMQELQCVKKESAMLYIEEALRNQRDNVGPYYEHLKEIIELLKFTSNQELLNESIAVEKERLNAEVNKTKGNLDEINQIVNLVCNLCDYVMKKCPEVKSGVSIPPYFRCPLSLELMLDPVIVASGQTYERQSIQTWLDHGLTVCPKTHQRLIHTNLIPNYTVKAMIANWCEENNVKLPSNSKHSNAAHISFPSDCLLHQDLDRVCSFGSSHSSNSNSKSSLQTGNAYEKQKGDDSLRLSGESNGCQSSETEKFEQQPPVPSRSHSRSESFSSSSSSTDYVLPVSKEVSGMSNKQPNVELSREITNGFPAPACKESGIFPSSLSGKQFQSPGLKIGRMENENEYNKNNNIITSHSNIDSHSVSSLGSGELTSTSHVNKLIEDLHSQSNETQTAAAEELRLLTKHKMENRILVGQCGTITHLLPLLYSDMKITQEHAVTALLNLSINEDNKALIMEAGAIEPLIHVLQTGNDGAKENSAAALFSLSVIDNNKAKIGRSGAVKALVDLLDSGTLRGKKDAVTALFNLSIFHENKARIIQAGAVKFLVLVLDPAHEMVDKAVALLANLSTIVEGRLDIVREGSIPLLVELVESGSQRGKENAASILSQLCLHSHKFCTLVLQEGAVPPLVALSQSGTPRAREKAQQLLSHFRNQREGAPGKGKSRR* 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03104 799 SMART arm_5 541 581 IPR000225 GO:0005515
Rops8g03104 799 SMART arm_5 664 703 IPR000225 GO:0005515
Rops8g03104 799 SMART arm_5 623 663 IPR000225 GO:0005515
Rops8g03104 799 SMART arm_5 582 622 IPR000225 GO:0005515
Rops8g03104 799 SMART arm_5 704 744 IPR000225 GO:0005515
Rops8g03104 799 SMART Ubox_2 243 306 IPR003613 GO:0004842|GO:0016567
Rops8g03104 799 Pfam Armadillo/beta-catenin-like repeat 706 743 IPR000225 GO:0005515
Rops8g03104 799 Pfam Armadillo/beta-catenin-like repeat 543 580 IPR000225 GO:0005515
Rops8g03104 799 Pfam Armadillo/beta-catenin-like repeat 582 621 IPR000225 GO:0005515
Rops8g03104 799 Pfam Armadillo/beta-catenin-like repeat 625 662 IPR000225 GO:0005515
Rops8g03104 799 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 593 635 IPR000225 GO:0005515
Rops8g03104 799 Pfam U-box domain 240 311 IPR003613 GO:0004842|GO:0016567
Rops8g03104 799 SUPERFAMILY RING/U-box 238 314 - -
Rops8g03104 799 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 634 676 IPR000225 GO:0005515
Rops8g03104 799 CDD RING-Ubox_PUB 241 293 IPR045210 -
Rops8g03104 799 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 552 594 IPR000225 GO:0005515
Rops8g03104 799 MobiDBLite consensus disorder prediction 345 366 - -
Rops8g03104 799 Coils Coil 196 216 - -
Rops8g03104 799 ProSiteProfiles U-box domain profile. 239 313 IPR003613 GO:0004842|GO:0016567
Rops8g03104 799 Gene3D - 482 648 IPR011989 -
Rops8g03104 799 SUPERFAMILY ARM repeat 509 784 IPR016024 -
Rops8g03104 799 MobiDBLite consensus disorder prediction 374 415 - -
Rops8g03104 799 FunFam RING-type E3 ubiquitin transferase 496 790 - -
Rops8g03104 799 MobiDBLite consensus disorder prediction 345 415 - -
Rops8g03104 799 Gene3D - 649 791 IPR011989 -
Rops8g03104 799 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 314 IPR013083 -
Rops8g03104 799 PANTHER U BOX DOMAIN-CONTAINING 34 785 - -
Rops8g03104 799 MobiDBLite consensus disorder prediction 774 799 - -
Rops8g03104 799 FunFam RING-type E3 ubiquitin transferase 237 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03104 Rops-Chr8 68840215 68847087 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03104 7 797 U-box Gene Family AT3G54790 52.375 0.0 698
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03104 - - gmx:100804684 1180.24