Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03098 ATGCCCAGAGCTCCATGTTGCGAGAAAATGGGGTTGAAGAAAGGACCATGGGCTCCAGAAGAAGATCAAATCCTCATCAATTACATCAAAAACTATGGTCATGCCAATTGGCGTGCTCTGCCCAAACATGCTGGGCTGCTAAGATGTGGAAAGAGTTGCAGACTTCGGTGGACAAATTATCTAAGGCCAGACATCAAACGGGGCAACTTTACCAAAGAAGAAGAGGACGCAATAATCAATTTGCATGAAATGTTGGGAAACAGATGGTCAGCTATTGCAGCAAGATTACCTGGCCGAACAGACAATGAGATAAAAAACGTGTGGCACACCCACTTGAAGAAGAGGCTGCCACAAAACCAACAGAACCAAGAACCAAAAAGAAACAAAAAACAAACCAAAAACTTGGAAGTGGAAGCCTCCGAATCCAACCAAGATGCCAAAGAAGAACAAGAAGACCCCATGAATTTTCCCATTCATGAAACCAAAGAGGAGAGCACAGAAGATAGGCCACTATCTCCTCCACAGTGTTCTAGTGACATGTCCTCCCTCACCACTAGTGAGCATAATACAAGCACTGTTACTAATCATGACATGTCCATAAATAATGAGAATAATGATGCTGATTCACCAGAGAATGATCTTGCATTGGATGAGGATTTTTGGTCAGAAGTGTTGTCATCTGATAATTCCAATGAGTTTCAACTTCCATTTTCTCCATTAGGGACCCAATCAAGTATGAGTGATGGCATGGACTTTTGGTATGATGTTTATGCCAGAGCTGAGGAAATAACCGAGTTATTGGAATTGTGA 810 0.4235 MPRAPCCEKMGLKKGPWAPEEDQILINYIKNYGHANWRALPKHAGLLRCGKSCRLRWTNYLRPDIKRGNFTKEEEDAIINLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLPQNQQNQEPKRNKKQTKNLEVEASESNQDAKEEQEDPMNFPIHETKEESTEDRPLSPPQCSSDMSSLTTSEHNTSTVTNHDMSINNENNDADSPENDLALDEDFWSEVLSSDNSNEFQLPFSPLGTQSSMSDGMDFWYDVYARAEEITELLEL* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03098 269 CDD SANT 69 112 IPR001005 -
Rops8g03098 269 Gene3D - 11 67 - -
Rops8g03098 269 FunFam Transcription factor MYB15 68 146 - -
Rops8g03098 269 CDD SANT 16 61 IPR001005 -
Rops8g03098 269 SMART sant 66 114 IPR001005 -
Rops8g03098 269 SMART sant 13 63 IPR001005 -
Rops8g03098 269 Coils Coil 132 152 - -
Rops8g03098 269 MobiDBLite consensus disorder prediction 170 209 - -
Rops8g03098 269 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops8g03098 269 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Rops8g03098 269 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Rops8g03098 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops8g03098 269 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops8g03098 269 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 231 - -
Rops8g03098 269 MobiDBLite consensus disorder prediction 114 210 - -
Rops8g03098 269 MobiDBLite consensus disorder prediction 126 169 - -
Rops8g03098 269 FunFam MYB-related transcription factor 13 66 - -
Rops8g03098 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops8g03098 269 Gene3D - 68 150 - -
Rops8g03098 269 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03098 Rops-Chr8 68786902 68788532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03098 1 269 MYB Transcription Factor Family AT2G31180 47.719 5.82e-85 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops8g03098 Myb_DNA-binding 7.1e-14 CL0123