Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03094 ATGATGGATTTTGATTCTCTTCTCTTCCAAAACCAAAACCAAAACCTTCTCTTCTTTCATGAAAATTCCTACCCTTTTTCCTGGGAGGATGAGTTGAATTTCTTCAATGATGACAATACCCTTCCCTTCAACTTCAGTGACCAATCACAATCACAATTCAAGGAATCATCCTCTGAATCAAATTCTTCAAGGTCTTTGGTTAGTTTTGAGTCACAAGAAGTCTCTTCTAATACAACTCATGCATCATCACCACCACCACCACCACCACCAAAGGAAAGTAAAAGGGTGTTTAGAGGAGTAAGGAGGAGGCCATGGGGGAAATTTGCTGCAGAGATAAGGGATTCTACAAGAAAAGGGGTTAGAGTGTGGATTGGAACATTTGACACAGCTGAAGCAGCTGCTTTGGCTTATGACCAAGCAGCTTTATCAACAAGGGGTTCTATGGCAGTGTTGAATTTCCCTGAGGAAGTGGTGAGGGAGTCATTGAAAGACATGGTTAATAAGTCTTGGGAAGAGGGCTCTTCCCCTGTGTTGGCACTCAAGAGAAAACACACCATGAGAAGAAAATCTGGTAAGCCTAGTAAAAAGAAAACCAAGAGGGATGACATGGATCAGATAGAAATCAATACTTGCCAAAATGTGCTGGTGTTGGAGGATTTGGGTGCTGAATATCTAGATCAACTTTTGAGTTTGACTTCATAG 702 0.4145 MMDFDSLLFQNQNQNLLFFHENSYPFSWEDELNFFNDDNTLPFNFSDQSQSQFKESSSESNSSRSLVSFESQEVSSNTTHASSPPPPPPPKESKRVFRGVRRRPWGKFAAEIRDSTRKGVRVWIGTFDTAEAAALAYDQAALSTRGSMAVLNFPEEVVRESLKDMVNKSWEEGSSPVLALKRKHTMRRKSGKPSKKKTKRDDMDQIEINTCQNVLVLEDLGAEYLDQLLSLTS* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03094 233 MobiDBLite consensus disorder prediction 48 98 - -
Rops8g03094 233 SMART rav1_2 96 160 IPR001471 GO:0003700|GO:0006355
Rops8g03094 233 FunFam Ethylene-responsive transcription factor 2 95 155 - -
Rops8g03094 233 PANTHER DNA-BINDING DOMAIN 54 229 IPR044808 GO:0003700|GO:0009873
Rops8g03094 233 Gene3D AP2/ERF domain 96 156 IPR036955 GO:0003700|GO:0006355
Rops8g03094 233 PRINTS Ethylene responsive element binding protein signature 120 136 IPR001471 GO:0003700|GO:0006355
Rops8g03094 233 PRINTS Ethylene responsive element binding protein signature 97 108 IPR001471 GO:0003700|GO:0006355
Rops8g03094 233 MobiDBLite consensus disorder prediction 48 80 - -
Rops8g03094 233 Pfam AP2 domain 96 146 IPR001471 GO:0003700|GO:0006355
Rops8g03094 233 MobiDBLite consensus disorder prediction 183 204 - -
Rops8g03094 233 ProSiteProfiles AP2/ERF domain profile. 96 154 IPR001471 GO:0003700|GO:0006355
Rops8g03094 233 CDD AP2 97 155 IPR001471 GO:0003700|GO:0006355
Rops8g03094 233 SUPERFAMILY DNA-binding domain 96 155 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03094 Rops-Chr8 68687858 68688721 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03094 41 229 AP2-EREBP Transcription Factor Family AT3G23240 49.735 5.00e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops8g03094 AP2 8.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03094 K14516 - gmx:100784784 249.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03094 8 68687858 68688721 Rops8g03094 8 68687858 68688721 ECH
Rops8g03094 8 68687858 68688721 Rops6g01234 6 27264137 27264886 PCT