Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03093 ATGGAGGGAGAGAGAAACAGAGAGGTGAGGTACAGAGGGATTCGAAGGAGGCCATGGGGTAAGTTTGCAGCAGAGATTCGTGACCCGACAAGAAAAGGGACTCGCATATGGCTGGGAACCTTTGACACCGCGGAGCAGGCTGCACGTGCTTACGATGCTGCCGCTTTTCATTTTCGTGGTCACAGAGCTATTCTCAACTTCCCTAATGAGTTTTGCAACTCTTCTAATAATCCAAACCCTTCAACTTCATTGCCCATGCCTCCTTCTGCTTCTGCTTCTTCTTCTTCTTCACTTTCATATTCTGGTACGTTAGGACAACAAGATGAAGATTGTCTTGAGTTGTCAAGCTTGGACAACAAGTTGTTAGAAGAACTCCTTCAGATCCCATGTACTACAGGAAGCTCTAGACGCGAATAG 417 0.4676 MEGERNREVRYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFDTAEQAARAYDAAAFHFRGHRAILNFPNEFCNSSNNPNPSTSLPMPPSASASSSSSLSYSGTLGQQDEDCLELSSLDNKLLEELLQIPCTTGSSRRE* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03093 138 SMART rav1_2 10 74 IPR001471 GO:0003700|GO:0006355
Rops8g03093 138 Pfam AP2 domain 10 61 IPR001471 GO:0003700|GO:0006355
Rops8g03093 138 CDD AP2 10 69 IPR001471 GO:0003700|GO:0006355
Rops8g03093 138 MobiDBLite consensus disorder prediction 69 104 - -
Rops8g03093 138 SUPERFAMILY DNA-binding domain 10 69 IPR016177 GO:0003677
Rops8g03093 138 PANTHER DNA-BINDING DOMAIN 7 119 IPR044808 GO:0003700|GO:0009873
Rops8g03093 138 Gene3D AP2/ERF domain 9 69 IPR036955 GO:0003700|GO:0006355
Rops8g03093 138 PRINTS Ethylene responsive element binding protein signature 11 22 IPR001471 GO:0003700|GO:0006355
Rops8g03093 138 PRINTS Ethylene responsive element binding protein signature 34 50 IPR001471 GO:0003700|GO:0006355
Rops8g03093 138 ProSiteProfiles AP2/ERF domain profile. 10 68 IPR001471 GO:0003700|GO:0006355
Rops8g03093 138 FunFam Ethylene-responsive transcription factor 2 9 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03093 Rops-Chr8 68675547 68675963 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03093 6 126 AP2-EREBP Transcription Factor Family AT3G23230 57.377 7.58e-39 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops8g03093 AP2 8.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03093 - - gmx:100779173 129.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03093 8 68675547 68675963 Rops8g03093 8 68675547 68675963 ECH
Rops8g03093 8 68675547 68675963 Rops6g01235 6 27306022 27306808 PCT