Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03092 ATGGATTTTGATTCTTCTCTATTCTCGTTCCAAATTCTAGAATCTTGTTCAAATTCATATGCCAATTCATGGGAAGAGTTTTTTTTGTTCAACAACCTTCCCTTCAAGGAATTATCCTTGGAATCCAAATCTTCATTGTGCAGTGGAGGATTAATGGAGTTACAAGAACTCACCTCCAATATCATATGCTTTGAAGGAAAAGATTCACAATCACCACCTCCACTGGCACAAAATGGTTCAAATCAACAATCACTATCAATAGCACCAACATGCAAACGAGAGAAGAGACCCTACAGAGGAGTAAGGAGAAGGCCATGGGGGAAATTCGCAGCAGAGATAAGGGACCCCACTAGGAATGGGGTTAGAGTGTGGCTTGGAACATTTGACACAGCTGAGGAAGCTGCTTTAGCTTATGACCAAGCAGCTTACTTGACAAGGGGTTTAAAGGCGACCCTTAATTTCTCAGAACAAGTGGCGAGGGAGTCCCTAAAAGATATGGGTTTTAAGACATTGAATCATAGTTGTTCACCCTTGTTAGAACTCAAAAGGATGCATGTATTGAGAACAAAATCTAAGGCTGGTGGTGGTGAAAAGGTGAAAAGGGTTTGCAGCAGCAGCAGGGAGTTAGAGAGTACTCAAAATGTGTTGGTATTGGAGGATTTGGGTCCTGAATATCTAGAGCAACTTTTGAGCTCCACTTCCCTTGAGAGTTTTAGTTCTTGA 723 0.4163 MDFDSSLFSFQILESCSNSYANSWEEFFLFNNLPFKELSLESKSSLCSGGLMELQELTSNIICFEGKDSQSPPPLAQNGSNQQSLSIAPTCKREKRPYRGVRRRPWGKFAAEIRDPTRNGVRVWLGTFDTAEEAALAYDQAAYLTRGLKATLNFSEQVARESLKDMGFKTLNHSCSPLLELKRMHVLRTKSKAGGGEKVKRVCSSSRELESTQNVLVLEDLGPEYLEQLLSSTSLESFSS* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03092 240 CDD AP2 98 157 IPR001471 GO:0003700|GO:0006355
Rops8g03092 240 SUPERFAMILY DNA-binding domain 98 156 IPR016177 GO:0003677
Rops8g03092 240 SMART rav1_2 97 161 IPR001471 GO:0003700|GO:0006355
Rops8g03092 240 FunFam Ethylene-responsive transcription factor 2 96 156 - -
Rops8g03092 240 PANTHER DNA-BINDING DOMAIN 80 233 IPR044808 GO:0003700|GO:0009873
Rops8g03092 240 Gene3D AP2/ERF domain 97 157 IPR036955 GO:0003700|GO:0006355
Rops8g03092 240 ProSiteProfiles AP2/ERF domain profile. 97 155 IPR001471 GO:0003700|GO:0006355
Rops8g03092 240 PRINTS Ethylene responsive element binding protein signature 98 109 IPR001471 GO:0003700|GO:0006355
Rops8g03092 240 PRINTS Ethylene responsive element binding protein signature 121 137 IPR001471 GO:0003700|GO:0006355
Rops8g03092 240 Pfam AP2 domain 98 143 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03092 Rops-Chr8 68671948 68672670 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03092 80 233 AP2-EREBP Transcription Factor Family AT3G23240 52.258 1.13e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops8g03092 AP2 6.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03092 K14516 - gmx:100818907 239.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03092 8 68671948 68672670 Rops8g04159 8 83744807 83745415 ECH
Rops8g03092 8 68671948 68672670 Rops6g01452 6 30349772 30350664 ECH
Rops8g03092 8 68671948 68672670 Rops8g03092 8 68671948 68672670 ECH
Rops8g03092 8 68671948 68672670 Rops6g01242 6 27481692 27482348 PCT