Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops8g03091 ATGGAAGAGGACTTGAAGGAAAAGGTGAAGAAAGAGGAACCAAAGCAAGTAAGGTACAGAGGAGTAAGGAGGCGGCCATGGGGAAAATTTGCTGCAGAGATTAGAGATTCAGCTAGACATGGAGCTAGAGTGTGGCTTGGAACCTTTAACACTGCAGAGGAAGCTGCAAGAGCTTATGATCGTGCTGCCTTTGAGATGAGAGGTACTTCGGCTATTCTCAACTTTCCAAATGAATATCCTCCGTGCAACGTGGCTTCTTCTCCTACTACCAAGTCCTATTCTTCATCTTCATCTTCATCATCATCATCATCTTCAACTTCAACTTCAATGGTTAAAACTGAGCTTGATAAACAAGTTTTCGAATTTGAGTGTTTGGATGACAAGTTGTTAGAGGAACTCCTCAGTTGTAATGAGAATGTGCACTATCAGTAA 432 0.4213 MEEDLKEKVKKEEPKQVRYRGVRRRPWGKFAAEIRDSARHGARVWLGTFNTAEEAARAYDRAAFEMRGTSAILNFPNEYPPCNVASSPTTKSYSSSSSSSSSSSSTSTSMVKTELDKQVFEFECLDDKLLEELLSCNENVHYQ* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops8g03091 143 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Rops8g03091 143 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Rops8g03091 143 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Rops8g03091 143 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Rops8g03091 143 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Rops8g03091 143 FunFam Ethylene-responsive transcription factor 2 17 77 - -
Rops8g03091 143 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Rops8g03091 143 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
Rops8g03091 143 MobiDBLite consensus disorder prediction 84 110 - -
Rops8g03091 143 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Rops8g03091 143 PANTHER DNA-BINDING DOMAIN 10 135 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops8g03091 Rops-Chr8 68648538 68649482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops8g03091 15 138 AP2-EREBP Transcription Factor Family AT3G23230 65.323 1.45e-44 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops8g03091 AP2 3.8e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops8g03091 - - gmx:100800069 164.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops8g03091 8 68648538 68649482 Rops8g03091 8 68648538 68649482 ECH